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pre3_saliva_scaffold_6_prodigal-single.1__X__X__00147
Bact-Virpre3_saliva_scaffold_6_prodigal-single.1__X__X__00147
Identity
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-135
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lmcB00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 28.0 | 3.85e-01 | 75.6% | 82.0% |
| 3t8qB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 43.0 | 4.50e-01 | 73.2% | 97.4% |
| 1ejfA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 30.0 | 3.26e-01 | 86.6% | 54.5% |
| 1sxjH01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.58 | 33.0 | 3.39e-01 | 86.6% | 57.3% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.57 | 41.0 | 3.72e-01 | 78.0% | 56.0% |
| 4rkiA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.56 | 33.0 | 3.35e-01 | 92.9% | 55.4% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.56 | 34.0 | 2.75e-01 | 91.3% | 30.6% |
| 5yjlC02 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.55 | 39.0 | 4.09e-01 | 72.4% | 96.4% |
| 3rjuA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.55 | 38.0 | 2.75e-01 | 70.1% | 81.5% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.55 | 30.0 | 3.24e-01 | 85.0% | 61.9% |
| 2ap1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 38.0 | 3.75e-01 | 73.2% | 98.6% |
| 3s6pA03 | 2.60.270.70 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › | 0.54 | 37.0 | 3.63e-01 | 70.9% | 76.8% |
| 3s8zA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 46.0 | 3.44e-01 | 92.9% | 69.3% |
| 5wceA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.54 | 32.0 | 3.33e-01 | 93.7% | 62.2% |
| 1jofA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 3.26e-01 | 92.1% | 75.9% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 32.0 | 3.22e-01 | 93.7% | 58.6% |
| 1mbyA00 | 2.40.50.930 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 30.0 | 3.94e-01 | 73.2% | 97.3% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 30.0 | 3.16e-01 | 85.0% | 61.9% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.53 | 23.0 | 3.12e-01 | 71.7% | 80.3% |
| 4trtA03 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.51 | 31.0 | 3.20e-01 | 93.7% | 62.5% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.51 | 35.0 | 3.83e-01 | 98.4% | 86.4% |
| 2hoeA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 36.0 | 3.43e-01 | 72.4% | 94.0% |
| 3b7fA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 42.0 | 3.11e-01 | 92.9% | 88.3% |
| 1gofA02 | 2.130.10.80 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller | 0.50 | 42.0 | 3.05e-01 | 92.9% | 46.4% |
| 3h1qA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.50 | 35.0 | 3.33e-01 | 71.7% | 83.7% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4064214 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.72 | 28.0 | 3.91e-01 | 74.8% | 70.8% |
| 3416606 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.69 | 40.0 | 3.41e-01 | 72.4% | 36.4% |
| 4263140 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.65 | 29.0 | 3.92e-01 | 74.8% | 78.6% |
| 5029736 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.64 | 32.0 | 3.28e-01 | 86.6% | 48.8% |
| 3588565 | 6048.1.1.1 ↗ | a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 | 0.61 | 37.0 | 4.34e-01 | 93.7% | 85.2% |
| 4998585 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.61 | 35.0 | 3.64e-01 | 92.9% | 60.0% |
| 3702817 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.60 | 35.0 | 3.44e-01 | 93.7% | 53.7% |
| 1822927 | 227.1.1.2 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.60 | 35.0 | 3.18e-01 | 90.6% | 44.2% |
| 5052550 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.59 | 35.0 | 3.55e-01 | 93.7% | 58.4% |
| 143428 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.59 | 34.0 | 3.54e-01 | 92.9% | 60.0% |
| 3934036 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.59 | 34.0 | 3.56e-01 | 92.9% | 60.8% |
| 5078494 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.58 | 33.0 | 3.38e-01 | 92.9% | 56.8% |
| 3719143 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.58 | 34.0 | 3.33e-01 | 92.9% | 54.1% |
| 3932751 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.57 | 34.0 | 3.46e-01 | 93.7% | 57.7% |
| 5059299 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.57 | 33.0 | 3.40e-01 | 92.9% | 59.2% |
| 3804177 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.57 | 34.0 | 3.26e-01 | 92.9% | 51.0% |
| 167574 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.57 | 33.0 | 3.35e-01 | 93.7% | 55.7% |
| 4987602 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.57 | 33.0 | 3.39e-01 | 87.4% | 57.6% |
| 3478161 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.57 | 35.0 | 3.43e-01 | 85.0% | 57.0% |
| 3256904 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.57 | 34.0 | 3.45e-01 | 85.0% | 60.0% |
| 1871497 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.57 | 32.0 | 3.37e-01 | 92.9% | 58.8% |
| 4934001 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.57 | 34.0 | 3.46e-01 | 92.1% | 60.0% |
| 3230925 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.57 | 34.0 | 3.46e-01 | 93.7% | 58.5% |
| 5028240 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.57 | 30.0 | 3.00e-01 | 87.4% | 49.2% |
| 3743107 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.56 | 35.0 | 3.44e-01 | 94.5% | 56.4% |
| 3397928 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.56 | 34.0 | 3.43e-01 | 85.0% | 60.0% |
| 4936049 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.56 | 32.0 | 3.35e-01 | 92.9% | 59.2% |
| 4015630 | 3257.1.1.0 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain | 0.55 | 39.0 | 3.28e-01 | 72.4% | 46.3% |
| 3802876 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.55 | 47.0 | 3.56e-01 | 93.7% | 55.9% |
| 3791518 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.55 | 32.0 | 3.36e-01 | 94.5% | 61.7% |
| 3939755 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.54 | 35.0 | 3.36e-01 | 92.1% | 55.4% |
| 4650306 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.54 | 31.0 | 3.20e-01 | 92.9% | 59.2% |
| 3743364 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.54 | 32.0 | 3.24e-01 | 74.0% | 58.4% |
| 3251045 | 227.1.1.6 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C | 0.54 | 33.0 | 3.17e-01 | 92.1% | 49.4% |
| 3551012 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.54 | 39.0 | 3.14e-01 | 74.0% | 43.4% |
| 5039026 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.54 | 30.0 | 3.12e-01 | 91.3% | 55.8% |
| 3997015 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.53 | 33.0 | 3.30e-01 | 93.7% | 59.2% |
| 2492036 | 227.1.1.8 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 | 0.53 | 33.0 | 3.28e-01 | 93.7% | 59.7% |
| 3845956 | 316.1.1.20 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › OAS1_C | 0.52 | 41.0 | 3.72e-01 | 82.7% | 99.4% |
| 3410153 | 5.1.3.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b | 0.52 | 44.0 | 3.47e-01 | 92.1% | 83.3% |
| 3624708 | 227.1.1.4 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 | 0.52 | 33.0 | 3.28e-01 | 93.7% | 58.5% |
| 5002020 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.52 | 34.0 | 3.59e-01 | 100.0% | 73.9% |
| 4038410 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.52 | 34.0 | 3.29e-01 | 85.0% | 60.0% |
| 4192565 | 5.1.4.29 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 | 0.51 | 43.0 | 3.27e-01 | 90.6% | 60.5% |
| 5019992 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.51 | 33.0 | 3.54e-01 | 100.0% | 73.9% |
| 4972398 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 36.0 | 3.37e-01 | 73.2% | 94.4% |
| 3722114 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.51 | 34.0 | 3.24e-01 | 91.3% | 56.8% |
| 166224 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 42.0 | 3.11e-01 | 92.9% | 88.3% |
| 3256903 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.51 | 33.0 | 3.26e-01 | 93.7% | 60.7% |
| 3785352 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.50 | 36.0 | 3.31e-01 | 92.1% | 57.0% |
| 3645846 | 5.1.4.383 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VPS11_N | 0.50 | 43.0 | 3.21e-01 | 95.3% | 84.9% |
| 1724304 | 9.1.1.30 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF_like | 0.50 | 35.0 | 3.82e-01 | 70.9% | 94.2% |
| 3440727 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 43.0 | 2.68e-01 | 95.3% | 36.8% |