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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00007

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00007

Identity

Kingdom:
phage

Quality

88.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-111
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.89 75.0 7.23e-01 96.9% 80.8%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 44.0 5.02e-01 89.2% 95.7%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 59.0 4.84e-01 100.0% 83.8%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.92e-01 80.0% 100.0%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 54.0 4.26e-01 98.5% 98.6%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 51.0 4.94e-01 92.3% 97.4%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.39e-01 89.2% 58.0%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 50.0 3.25e-01 93.8% 39.9%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.61 44.0 3.63e-01 80.0% 71.3%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 50.0 3.23e-01 93.8% 45.3%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.82e-01 81.5% 82.6%
1ddvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 44.0 3.93e-01 81.5% 90.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 4.40e-01 73.8% 100.0%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.60 51.0 4.10e-01 100.0% 94.2%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 49.0 3.23e-01 93.8% 45.7%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 4.44e-01 75.4% 100.0%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 49.0 4.68e-01 93.8% 94.7%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.60e-01 78.5% 92.9%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.59 43.0 4.21e-01 80.0% 74.6%
4nehA01 2.130.10.130 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Integrin alpha, N-terminal 0.59 41.0 2.55e-01 72.3% 44.1%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 46.0 3.03e-01 93.8% 41.9%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 46.0 3.11e-01 93.8% 37.1%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.29e-01 80.0% 86.8%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 40.0 4.30e-01 81.5% 100.0%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.49e-01 80.0% 88.0%
3hkoA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 40.0 2.76e-01 75.4% 35.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.60e-01 87.7% 77.4%
1yuaA02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 42.0 4.40e-01 86.2% 91.4%
3oa5A01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 36.0 2.93e-01 75.4% 33.3%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.53 43.0 3.76e-01 93.8% 89.5%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.53 42.0 3.59e-01 92.3% 76.5%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 41.0 2.63e-01 86.2% 22.9%
1wxrA03 3.30.160.280 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 41.0 3.95e-01 86.2% 92.1%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 3.69e-01 100.0% 77.4%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 38.0 3.99e-01 80.0% 95.0%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.52 36.0 2.93e-01 73.8% 75.9%
4dwsA01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 38.0 3.15e-01 80.0% 98.4%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.52 40.0 3.28e-01 90.8% 97.2%
2xetB00 2.60.40.2070 Mainly Beta › Sandwich › Immunoglobulin-like › PapC, C-terminal domain 0.51 37.0 3.40e-01 98.5% 56.8%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 41.0 3.11e-01 96.9% 83.6%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 40.0 2.57e-01 92.3% 41.2%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 4.00e-01 100.0% 79.5%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4974669 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.72 59.0 5.24e-01 95.4% 63.3%
5017637 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.71 56.0 6.02e-01 95.4% 100.0%
3706916 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 53.0 3.95e-01 80.0% 85.6%
3264806 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.55e-01 89.2% 100.0%
4266110 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.68 60.0 5.88e-01 98.5% 91.4%
2526334 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 54.0 3.97e-01 92.3% 49.7%
3614414 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.46e-01 86.2% 94.8%
3911238 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 54.0 4.91e-01 90.8% 67.1%
3505640 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.66 45.0 4.69e-01 89.2% 76.7%
3208203 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.66 42.0 4.51e-01 86.2% 76.4%
3935170 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.66 42.0 4.83e-01 84.6% 93.3%
3500033 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 44.0 4.90e-01 90.8% 90.0%
3189994 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.65 45.0 3.98e-01 90.8% 51.1%
3911241 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 51.0 4.47e-01 89.2% 56.0%
3702861 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.65 45.0 4.84e-01 89.2% 85.5%
3315100 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 5.14e-01 87.7% 86.2%
3828348 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.36e-01 90.8% 100.0%
3256498 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.34e-01 95.4% 100.0%
3561707 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 53.0 4.58e-01 90.8% 64.0%
3774108 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 50.0 4.44e-01 89.2% 58.9%
3821920 4.1.1.283 beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.64 49.0 5.25e-01 83.1% 100.0%
3926623 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.64 52.0 5.05e-01 90.8% 91.8%
3612184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.28e-01 96.9% 95.0%
4000403 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.63 45.0 4.97e-01 95.4% 100.0%
3622055 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 52.0 4.77e-01 90.8% 70.6%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 52.0 4.11e-01 90.8% 51.9%
3815479 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.94e-01 90.8% 94.7%
3340900 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.20e-01 90.8% 100.0%
3503815 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 52.0 4.80e-01 92.3% 70.6%
3929758 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 45.0 4.78e-01 76.9% 100.0%
3359784 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 50.0 5.01e-01 87.7% 100.0%
3433500 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.62 39.0 4.32e-01 83.1% 82.0%
4963580 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.62 52.0 4.87e-01 93.8% 95.0%
3707347 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 47.0 5.06e-01 95.4% 98.2%
3913687 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 51.0 4.64e-01 90.8% 70.0%
3581143 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.62 47.0 4.74e-01 83.1% 81.5%
3514906 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 52.0 3.72e-01 92.3% 31.6%
3815480 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 50.0 5.08e-01 89.2% 100.0%
3593875 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 45.0 4.86e-01 92.3% 90.9%
3969508 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 50.0 3.77e-01 90.8% 38.2%
1271326 220.1.1.54 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_18 0.62 46.0 3.70e-01 81.5% 66.4%
3188574 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.62 53.0 5.33e-01 98.5% 96.9%
3393360 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 51.0 4.23e-01 90.8% 52.2%
3408592 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 50.0 4.36e-01 90.8% 58.0%
3429682 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.73e-01 87.7% 86.7%
3535298 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 50.0 4.55e-01 90.8% 70.0%
4028185 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.61 42.0 4.72e-01 83.1% 94.0%
3247178 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.61 50.0 4.72e-01 92.3% 83.7%
3931993 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.98e-01 100.0% 95.0%
3328891 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.61 44.0 4.47e-01 80.0% 100.0%
3940305 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.61 49.0 3.43e-01 90.8% 37.3%
3626694 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.48e-01 90.8% 67.8%
3835464 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.81e-01 89.2% 94.3%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.60 44.0 4.59e-01 87.7% 94.5%
3702274 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 44.0 4.62e-01 80.0% 100.0%
3395948 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.60 46.0 4.95e-01 83.1% 100.0%
3801791 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.80e-01 89.2% 87.7%
3937635 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.60 44.0 3.23e-01 80.0% 27.9%
3502388 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.54e-01 86.2% 74.7%
3709028 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.59 48.0 3.29e-01 90.8% 36.4%
3991244 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.59 38.0 4.35e-01 73.8% 97.8%
3737735 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 47.0 2.99e-01 93.8% 39.2%
3935130 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.68e-01 96.9% 98.2%
3964033 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 41.0 4.44e-01 78.5% 100.0%
3828657 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.28e-01 98.5% 97.0%
4259069 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 3.39e-01 92.3% 31.0%
3547089 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.58 46.0 4.21e-01 90.8% 72.2%
5049980 7573.1.1.0 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like 0.57 38.0 2.80e-01 70.8% 46.5%
1283866 220.1.1.51 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.56 42.0 3.60e-01 87.7% 77.4%
4795566 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 45.0 4.49e-01 100.0% 91.0%
3213121 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.55 44.0 4.32e-01 93.8% 90.7%
4436049 1190.1.1.1 a+b two layers › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › Curli production assembly/transport component CsgF › CsgF 0.55 39.0 3.41e-01 75.4% 53.0%
3246005 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 44.0 2.88e-01 93.8% 37.4%
4289796 375.1.1.60 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.54 44.0 4.44e-01 93.8% 90.8%
3816553 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.53 41.0 4.36e-01 89.2% 100.0%
4948153 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.57e-01 73.8% 82.9%