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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00011

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00011

Identity

Kingdom:
phage

Quality

65.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-67
PDB
D2 high residues 73-154
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.74 52.0 4.91e-01 74.4% 67.0%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.64 45.0 4.31e-01 73.2% 77.7%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 41.0 4.90e-01 84.1% 100.0%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.63 45.0 3.95e-01 74.4% 53.7%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 36.0 4.49e-01 76.8% 97.9%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.61 45.0 4.14e-01 79.3% 93.6%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 3.84e-01 90.2% 92.2%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 3.88e-01 90.2% 95.3%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 41.0 3.72e-01 78.0% 73.9%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.57 42.0 3.86e-01 79.3% 83.6%
2r6uA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 34.0 2.98e-01 73.2% 40.2%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 38.0 4.32e-01 84.1% 100.0%
2lc4A00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.63e-01 74.4% 89.2%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.79e-01 91.5% 92.2%
1dzkA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.75e-01 90.2% 95.9%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.56 44.0 3.60e-01 89.0% 84.9%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 39.0 3.28e-01 74.4% 76.7%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 4.36e-01 78.0% 100.0%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.32e-01 70.7% 94.3%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.71e-01 90.2% 94.4%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.17e-01 84.1% 81.0%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.53 47.0 3.75e-01 100.0% 60.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.53 37.0 4.05e-01 82.9% 91.0%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 37.0 4.08e-01 75.6% 95.3%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 36.0 3.12e-01 70.7% 53.2%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.99e-01 87.8% 77.8%
2hoeA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.51e-01 91.5% 83.4%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.51 43.0 3.38e-01 92.7% 72.9%
2l2fA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 38.0 3.54e-01 81.7% 100.0%
2w40A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 2.82e-01 85.4% 98.8%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 40.0 3.46e-01 90.2% 89.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3578208 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 42.0 4.95e-01 73.2% 92.7%
3924377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 43.0 5.00e-01 79.3% 100.0%
1281147 9.23.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › Lipocalin_3 0.64 45.0 4.33e-01 73.2% 76.6%
5028597 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.63 33.0 3.42e-01 75.6% 51.2%
3989574 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.33e-01 75.6% 70.6%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 40.0 4.63e-01 74.4% 95.0%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.49e-01 90.2% 78.8%
4139943 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.59 42.0 3.46e-01 74.4% 54.2%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 38.0 4.45e-01 87.8% 100.0%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.63e-01 80.5% 98.4%
3789706 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.57 41.0 3.24e-01 74.4% 67.6%
3619070 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.57 40.0 3.24e-01 74.4% 69.7%
4015238 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.57 43.0 3.70e-01 79.3% 56.8%
933 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.57 41.0 3.72e-01 78.0% 73.9%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 3.41e-01 90.2% 34.4%
3281945 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 42.0 4.13e-01 80.5% 81.1%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 46.0 3.37e-01 90.2% 33.8%
1293436 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.56 46.0 3.80e-01 91.5% 93.4%
4019085 3270.1.1.1 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.56 40.0 3.92e-01 75.6% 96.7%
3959903 243.18.1.1 ↗ a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.55 38.0 2.88e-01 73.2% 40.5%
5022447 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 43.0 3.81e-01 90.2% 92.8%
3279508 283.1.1.4 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.53 45.0 3.87e-01 96.3% 66.7%
4459365 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 39.0 4.04e-01 79.3% 83.7%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.52 41.0 4.20e-01 84.1% 87.5%
4248855 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 40.0 4.18e-01 89.0% 93.2%
3325372 3156.1.1.1 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › COX2 0.51 38.0 3.58e-01 80.5% 82.0%
3812869 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.51 37.0 3.53e-01 79.3% 80.0%
3699300 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.50 34.0 2.21e-01 79.3% 12.4%
4988423 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.50 36.0 3.73e-01 76.8% 80.0%