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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00028

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00028

Identity

Kingdom:
phage

Quality

76.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-86
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pkaA00 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 31.0 3.23e-01 100.0% 51.2%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 41.0 3.22e-01 77.4% 85.4%
1upsA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 43.0 3.76e-01 98.8% 97.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3961124 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.54 37.0 2.63e-01 70.2% 78.0%
3743651 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.52 44.0 3.69e-01 98.8% 82.5%
D2 high residues 102-157
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vugA03 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.56 49.0 4.00e-01 100.0% 52.9%
1o54A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 40.0 2.85e-01 91.1% 22.8%
4fvmA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 37.0 2.57e-01 94.6% 17.1%
3mb5A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 37.0 2.68e-01 94.6% 23.3%
2yvlA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 35.0 2.56e-01 98.2% 21.7%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4944655 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.58 39.0 3.05e-01 89.3% 28.9%
4938763 294.2.1.0 ↗ a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C 0.57 39.0 3.66e-01 73.2% 65.3%
4139105 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.55 32.0 2.30e-01 89.3% 17.1%
5017116 11.1.1.1403 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 0.54 42.0 3.13e-01 87.5% 32.7%
3493726 59.1.1.7 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Tau95_N 0.54 38.0 3.21e-01 85.7% 43.0%
3223309 11.1.1.934 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N, Arrestin_C 0.51 35.0 2.39e-01 89.3% 15.6%
4990821 7571.1.1.1 ↗ a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.51 33.0 2.20e-01 83.9% 13.5%
5052927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 2.58e-01 85.7% 28.9%