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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00034
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00034
Identity
- Kingdom:
- phage
Quality
46.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 116-247
D2
high
residues 252-340
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1burS00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.52 | 44.0 | 3.99e-01 | 93.3% | 96.7% |
| 1e2rA02 | 2.140.10.20 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase | 0.52 | 40.0 | 2.63e-01 | 84.3% | 37.0% |
| 2kc8A00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.52 | 38.0 | 3.76e-01 | 83.1% | 73.7% |
| 4jlxA02 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.52 | 39.0 | 3.20e-01 | 79.8% | 88.1% |
| 2o3oA02 | 3.30.310.160 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 | 0.51 | 41.0 | 3.84e-01 | 92.1% | 97.5% |
| 5i47B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 34.0 | 3.40e-01 | 70.8% | 66.3% |
| 1wxxA01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.50 | 30.0 | 3.34e-01 | 79.8% | 78.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3990109 | 2484.1.1.102 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_ISL3 | 0.65 | 37.0 | 3.18e-01 | 93.3% | 36.3% |
| 3484229 | 4050.1.1.0 ↗ | few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz | 0.59 | 31.0 | 3.92e-01 | 75.3% | 88.0% |
| 2771595 | 4050.1.1.0 ↗ | few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz | 0.57 | 31.0 | 3.91e-01 | 78.7% | 92.0% |
| 3903694 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.57 | 36.0 | 2.47e-01 | 96.6% | 18.4% |
| 3217045 | 633.23.1.14 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_3 | 0.53 | 35.0 | 2.88e-01 | 89.9% | 38.4% |
| 3797529 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.52 | 37.0 | 3.27e-01 | 75.3% | 54.8% |
| 4029950 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 37.0 | 3.55e-01 | 95.5% | 65.0% |