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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00035

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00035

Identity

Kingdom:
phage

Quality

77.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-132
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lxlA00 1.25.40.270 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein vta1 0.68 43.0 3.93e-01 88.0% 48.5%
3cerA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.59 45.0 3.87e-01 81.6% 91.7%
4brcA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.59 45.0 3.72e-01 81.6% 88.2%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.57 35.0 4.10e-01 96.0% 86.4%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 43.0 4.18e-01 83.2% 92.1%
1r3bA01 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.53 44.0 3.99e-01 89.6% 88.5%
4dxwA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 36.0 3.76e-01 85.6% 75.9%
1t6cA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.53 40.0 3.61e-01 81.6% 90.6%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.52 39.0 3.85e-01 79.2% 73.1%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.51 28.0 3.64e-01 83.2% 98.5%
5jolA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 30.0 3.50e-01 98.4% 86.6%
3hi0A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.51 45.0 4.00e-01 98.4% 90.2%
2b39A06 2.20.130.20 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › 0.50 32.0 3.22e-01 100.0% 62.9%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
167495 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.59 45.0 3.86e-01 81.6% 91.2%
4862607 633.16.1.2 ↗ alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › TcdB_N 0.57 38.0 4.35e-01 94.4% 94.4%
3887212 150.1.1.57 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › NEPRO_N 0.55 44.0 3.67e-01 86.4% 97.3%
4964374 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.55 35.0 3.81e-01 87.2% 77.1%
4409479 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.52 32.0 3.40e-01 83.2% 67.0%
1556812 612.1.1.0 ↗ alpha arrays › Retroviral matrix proteins › Retroviral matrix proteins › Retroviral matrix proteins 0.52 39.0 3.85e-01 79.2% 73.1%
3949916 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.50 44.0 3.88e-01 96.8% 94.7%
5002665 2484.1.1.29 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA 0.50 44.0 3.97e-01 96.8% 88.6%