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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00081
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00081
Identity
- Kingdom:
- phage
Quality
78.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-37_113-155
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.65 | 34.0 | 3.25e-01 | 100.0% | 43.6% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.61 | 53.0 | 4.77e-01 | 95.7% | 100.0% |
| 3kluA01 | 3.30.2220.30 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › | 0.59 | 45.0 | 3.95e-01 | 100.0% | 52.7% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.58 | 33.0 | 3.42e-01 | 100.0% | 57.4% |
| 2pejA00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.58 | 50.0 | 4.39e-01 | 100.0% | 64.2% |
| 2k85A00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.58 | 38.0 | 3.95e-01 | 76.8% | 72.3% |
| 6wm2P02 | 1.25.40.150 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › V-type ATPase, subunit H, C-terminal domain | 0.58 | 40.0 | 3.46e-01 | 73.9% | 45.9% |
| 2fi1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 46.0 | 4.72e-01 | 98.6% | 96.9% |
| 4fqgB03 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.55 | 34.0 | 3.48e-01 | 98.6% | 62.1% |
| 4uurA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 46.0 | 3.90e-01 | 98.6% | 76.6% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 43.0 | 4.40e-01 | 97.1% | 100.0% |
| 1l0oC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 33.0 | 3.55e-01 | 88.4% | 78.9% |
| 1ni3A03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.50 | 41.0 | 3.84e-01 | 95.7% | 82.4% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4270831 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.64 | 54.0 | 4.68e-01 | 92.8% | 88.6% |
| 4606105 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.63 | 52.0 | 4.55e-01 | 88.4% | 90.0% |
| 4174198 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.63 | 55.0 | 4.85e-01 | 97.1% | 95.0% |
| 4547149 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.59 | 49.0 | 3.96e-01 | 97.1% | 88.3% |
| 5005281 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.58 | 51.0 | 4.02e-01 | 100.0% | 66.7% |
| 4418037 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.58 | 49.0 | 3.91e-01 | 98.6% | 87.2% |
| 4988178 | 633.29.1.0 ↗ | alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 | 0.57 | 47.0 | 4.31e-01 | 92.8% | 93.7% |
| 4304800 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.56 | 47.0 | 3.76e-01 | 100.0% | 87.4% |
| 3884665 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 34.0 | 2.70e-01 | 94.2% | 30.0% |
| 4544247 | 132.3.1.1 ↗ | alpha bundles › ACP-like › Hypothetical protein YjbJ › Hypothetical protein YjbJ › CsbD | 0.55 | 44.0 | 4.61e-01 | 91.3% | 100.0% |
| 4681908 | 518.1.1.1 ↗ | alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N | 0.53 | 44.0 | 4.27e-01 | 94.2% | 82.7% |
| 3841584 | 633.21.1.44 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › SCAMP | 0.52 | 41.0 | 3.30e-01 | 87.0% | 78.6% |
| 4331721 | 101.1.1.225 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF6262 | 0.52 | 36.0 | 3.62e-01 | 71.0% | 77.1% |
| 3727213 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 38.0 | 3.90e-01 | 76.8% | 96.9% |
D2
high
residues 39-108