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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00096

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00096

Identity

Kingdom:
phage

Quality

83.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-53_76-90
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 41.0 3.80e-01 73.8% 67.4%
2w20A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.58 34.0 3.24e-01 90.8% 47.5%
6wimA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 44.0 4.30e-01 84.6% 95.9%
1ntvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.08e-01 80.0% 59.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3401089 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 51.0 4.08e-01 95.4% 93.1%
4311371 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.53 43.0 3.61e-01 93.8% 92.5%
4474612 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.52 39.0 2.97e-01 93.8% 30.6%
D2 medium residues 54-75_91-123
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ka6B00 6.10.250.3310 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › signal transducer and activator of transcription 1 0.52 24.0 2.69e-01 96.4% 46.7%