Back to structures

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00141

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00141

Identity

Kingdom:
phage

Quality

81.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-77
PDB
Domain cluster: representative
CATH (96)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hvzA02 3.30.70.2970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function (DUF541), domain 2 0.85 78.0 6.60e-01 100.0% 74.1%
8d8lF01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.82 73.0 5.92e-01 94.4% 58.5%
3g2mA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.81 55.0 4.08e-01 100.0% 30.3%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.80 64.0 5.11e-01 95.8% 45.5%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.77 59.0 5.69e-01 100.0% 72.5%
2j5aA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.77 69.0 5.99e-01 100.0% 65.1%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.77 62.0 4.84e-01 97.2% 41.4%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.76 69.0 5.95e-01 100.0% 65.4%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.76 66.0 5.92e-01 97.2% 69.0%
8cwoF01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.75 64.0 5.93e-01 95.8% 73.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.74 58.0 5.15e-01 83.1% 86.9%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.74 64.0 5.78e-01 97.2% 71.3%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.74 56.0 5.17e-01 100.0% 64.4%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.73 64.0 5.56e-01 100.0% 92.0%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.73 65.0 4.01e-01 98.6% 20.6%
1qdlA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.72 65.0 3.96e-01 98.6% 20.5%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 63.0 5.51e-01 98.6% 73.8%
4jxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.72 49.0 3.64e-01 98.6% 27.7%
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 58.0 4.07e-01 98.6% 28.8%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.71 62.0 5.39e-01 100.0% 63.9%
3pcoB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.71 57.0 5.24e-01 100.0% 67.0%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.71 57.0 5.25e-01 100.0% 66.7%
1b7yB06 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.71 57.0 5.37e-01 100.0% 73.3%
3hp7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 64.0 4.54e-01 100.0% 34.8%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.71 62.0 5.52e-01 98.6% 69.4%
5jxzA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.71 63.0 3.95e-01 98.6% 22.3%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 51.0 4.97e-01 98.6% 70.0%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 52.0 5.03e-01 98.6% 70.9%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.70 60.0 5.07e-01 97.2% 59.7%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.70 53.0 4.88e-01 98.6% 62.4%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 57.0 5.33e-01 97.2% 73.9%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.69 53.0 5.06e-01 98.6% 69.8%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.69 55.0 5.22e-01 97.2% 72.9%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.69 55.0 5.58e-01 100.0% 91.2%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.69 59.0 5.25e-01 100.0% 66.7%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 60.0 5.01e-01 100.0% 95.3%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.68 55.0 5.14e-01 94.4% 71.1%
3m86A00 2.60.40.2020 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 54.0 4.67e-01 98.6% 55.9%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 62.0 5.21e-01 100.0% 66.7%
1cg2A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 59.0 5.12e-01 98.6% 70.0%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 56.0 4.84e-01 98.6% 99.2%
3kp0A03 3.30.30.60 Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain 0.67 50.0 5.16e-01 95.8% 86.6%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 53.0 4.78e-01 100.0% 63.0%
3qw9B00 2.60.40.4100 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain 0.66 59.0 4.49e-01 100.0% 47.6%
2vi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 45.0 3.46e-01 98.6% 31.3%
2pokA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 58.0 4.39e-01 100.0% 80.0%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 59.0 4.16e-01 100.0% 44.8%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.64 52.0 5.40e-01 100.0% 98.5%
1hnnA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 58.0 3.89e-01 100.0% 81.2%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 57.0 4.88e-01 100.0% 67.0%
2bzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 56.0 3.93e-01 100.0% 30.6%
4mt1A03 3.30.70.1320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like 0.64 53.0 4.83e-01 100.0% 68.4%
1sqeA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 51.0 4.58e-01 97.2% 62.4%
7ec0P01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 55.0 4.02e-01 97.2% 59.2%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 49.0 4.33e-01 100.0% 57.1%
3e23A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 56.0 4.05e-01 100.0% 35.4%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 53.0 4.72e-01 100.0% 64.7%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 56.0 4.03e-01 100.0% 40.8%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.63 50.0 5.21e-01 100.0% 100.0%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 49.0 4.55e-01 100.0% 67.4%
2i62A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 56.0 3.79e-01 100.0% 28.0%
7jrjK01 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.62 55.0 4.22e-01 97.2% 49.4%
5xzqF00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 52.0 4.60e-01 100.0% 64.1%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 49.0 4.36e-01 98.6% 59.4%
3eniC00 2.50.10.10 Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A 0.61 53.0 3.44e-01 100.0% 29.8%
3rgfA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 43.0 3.93e-01 97.2% 55.2%
2pgcC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 47.0 4.29e-01 98.6% 62.9%
4dkjA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 49.0 3.20e-01 98.6% 20.9%
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.60 50.0 4.02e-01 94.4% 85.6%
3u3lC00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.60 44.0 3.18e-01 81.7% 73.5%
2ftrA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 50.0 4.47e-01 95.8% 65.0%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 46.0 4.46e-01 93.0% 76.9%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 50.0 4.44e-01 98.6% 65.1%
3gk6A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.59 48.0 3.83e-01 91.5% 43.8%
3w3sA01 3.30.70.1920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 3.82e-01 100.0% 41.1%
4bhqA00 3.30.70.2830 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 49.0 4.35e-01 100.0% 63.3%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 48.0 4.27e-01 95.8% 63.1%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 51.0 4.78e-01 100.0% 95.5%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 45.0 4.13e-01 93.0% 65.6%
1qf6A02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.56 45.0 4.13e-01 95.8% 91.5%
1yaxB00 3.30.450.140 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain 0.56 47.0 3.84e-01 94.4% 76.9%
4lbhA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.55 44.0 4.06e-01 97.2% 67.0%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 40.0 3.64e-01 98.6% 57.7%
3lo3A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 42.0 3.92e-01 98.6% 66.0%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.54 45.0 4.08e-01 98.6% 67.0%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.54 42.0 3.83e-01 84.5% 85.1%
7d58G01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.53 44.0 4.37e-01 100.0% 100.0%
2i79D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 47.0 3.59e-01 98.6% 53.3%
5c82A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 46.0 3.53e-01 97.2% 52.4%
3dr6B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 47.0 3.60e-01 100.0% 55.0%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.99e-01 98.6% 81.4%
1go3E02 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.53 43.0 4.22e-01 100.0% 97.5%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 47.0 3.07e-01 100.0% 38.3%
3i4hX02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 41.0 3.62e-01 85.9% 75.0%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 45.0 3.49e-01 98.6% 54.9%
3ayhB01 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.51 42.0 4.10e-01 100.0% 100.0%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3210886 304.8.1.78 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7637 0.83 72.0 6.25e-01 97.2% 63.8%
3223328 304.8.1.78 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7637 0.81 73.0 6.35e-01 100.0% 66.7%
5035880 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.81 64.0 6.86e-01 91.5% 100.0%
3220212 304.12.1.11 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › DUF7637 0.81 72.0 6.20e-01 100.0% 63.6%
3970088 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.81 64.0 5.82e-01 100.0% 64.2%
3974775 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.80 63.0 5.68e-01 100.0% 63.2%
3471357 304.133.1.0 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein 0.80 70.0 5.80e-01 100.0% 56.7%
4937751 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.79 72.0 5.97e-01 100.0% 59.2%
3802659 304.8.1.66 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7049 0.78 66.0 5.76e-01 100.0% 61.9%
4562028 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.78 68.0 5.34e-01 100.0% 46.9%
4957999 304.8.1.22 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.78 59.0 5.30e-01 98.6% 60.0%
5036011 304.28.1.38 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › CAA_C 0.77 65.0 4.67e-01 97.2% 33.7%
984477 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.77 68.0 6.10e-01 98.6% 70.7%
9384 2003.1.5.55 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.77 56.0 4.09e-01 98.6% 30.7%
3492449 256.1.1.9 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › YbjQ_3 0.75 62.0 6.13e-01 100.0% 86.7%
3615945 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.75 62.0 5.68e-01 100.0% 69.1%
3289874 886.1.1.2 a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.75 62.0 4.86e-01 93.0% 43.3%
4962586 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.75 56.0 5.34e-01 98.6% 68.7%
3555669 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.74 58.0 4.82e-01 100.0% 49.2%
3641833 304.8.1.57 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_ACR_D1 0.74 56.0 4.71e-01 98.6% 48.3%
3991844 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.73 60.0 5.36e-01 100.0% 64.0%
3778612 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.73 59.0 5.29e-01 100.0% 63.0%
3230024 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.73 64.0 4.04e-01 100.0% 20.5%
3965354 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.73 64.0 5.96e-01 98.6% 98.9%
4985331 256.1.1.1 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.73 59.0 5.87e-01 100.0% 85.3%
4940779 256.1.1.0 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.73 61.0 6.18e-01 100.0% 92.9%
3605491 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.73 56.0 4.73e-01 98.6% 49.2%
4515208 304.24.1.7 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › V_ATPase_I 0.73 57.0 4.78e-01 100.0% 51.3%
3980313 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.72 62.0 5.45e-01 95.8% 64.8%
5039234 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.72 60.0 4.39e-01 98.6% 34.6%
3665392 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 57.0 4.79e-01 98.6% 50.8%
3672813 304.28.1.7 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › tRNA_synt_2f 0.72 60.0 6.19e-01 98.6% 100.0%
2502610 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.72 61.0 5.51e-01 97.2% 68.4%
5017604 872.3.1.1 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_1 0.72 62.0 5.83e-01 100.0% 83.3%
4350044 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.71 62.0 5.57e-01 100.0% 69.0%
3949263 304.124.1.9 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.71 62.0 5.42e-01 95.8% 66.7%
5031924 256.1.1.1 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.71 57.0 5.90e-01 95.8% 95.4%
3778963 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.71 57.0 4.86e-01 100.0% 53.3%
3607007 306.5.1.0 a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP 0.71 62.0 5.19e-01 97.2% 99.2%
3286460 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.71 65.0 4.23e-01 98.6% 45.2%
3596783 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.71 55.0 4.70e-01 98.6% 52.2%
4397160 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.70 57.0 4.76e-01 100.0% 51.2%
3970985 304.124.1.9 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.70 63.0 5.02e-01 100.0% 65.0%
4941686 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.70 50.0 5.11e-01 94.4% 77.1%
3915879 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.70 56.0 4.99e-01 100.0% 60.0%
4994093 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.69 58.0 4.46e-01 98.6% 40.0%
4926965 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 55.0 4.80e-01 100.0% 57.3%
3587889 2003.1.5.79 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 0.69 61.0 4.35e-01 100.0% 34.5%
3633972 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.68 59.0 5.29e-01 100.0% 73.3%
5029745 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.68 59.0 5.74e-01 97.2% 100.0%
4324371 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.68 59.0 3.71e-01 97.2% 37.4%
3499425 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.68 59.0 5.18e-01 100.0% 71.6%
3255400 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 55.0 3.45e-01 97.2% 16.0%
5013821 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.67 59.0 5.02e-01 100.0% 75.8%
3687923 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.67 60.0 4.04e-01 100.0% 29.4%
4014343 304.18.1.0 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS 0.67 58.0 5.18e-01 100.0% 72.4%
3268447 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.67 53.0 4.77e-01 94.4% 61.0%
3700065 304.49.1.0 a+b two layers › Alpha-beta plaits › TRADD, N-terminal domain/Dystroglycan, domain 2 › TRADD, N-terminal domain/Dystroglycan, domain 2 0.67 54.0 4.67e-01 97.2% 57.3%
3687652 872.1.1.0 a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like 0.67 57.0 5.79e-01 100.0% 100.0%
4028735 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.66 56.0 4.98e-01 100.0% 66.0%
3704046 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.66 57.0 5.15e-01 100.0% 70.5%
4019555 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.66 54.0 4.73e-01 97.2% 59.1%
4989370 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.65 58.0 4.16e-01 100.0% 39.0%
3911821 304.47.1.3 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA_Gpr126 0.65 55.0 4.91e-01 100.0% 65.7%
5024146 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.65 52.0 4.73e-01 95.8% 64.0%
4958424 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.65 55.0 4.22e-01 100.0% 41.9%
3822124 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.65 52.0 4.67e-01 98.6% 61.9%
3957946 256.1.1.12 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › SOUL 0.65 51.0 4.82e-01 94.4% 71.1%
3307617 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.65 52.0 4.60e-01 97.2% 60.0%
4088643 304.18.1.1 a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB 0.64 55.0 4.95e-01 100.0% 68.6%
4026677 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.64 52.0 4.72e-01 98.6% 66.0%
2167678 2003.1.5.9 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NNMT_PNMT_TEMT 0.64 57.0 3.88e-01 100.0% 28.1%
3236767 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.63 52.0 4.81e-01 94.4% 80.0%
3712894 273.1.1.2 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.63 54.0 4.35e-01 95.8% 48.6%
3614061 864.1.1.8 a+b two layers › DLC › DLC › DLC › CEP76_C 0.63 52.0 4.21e-01 100.0% 46.9%
3720046 304.55.2.8 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › FAZ1_cons 0.62 52.0 4.74e-01 100.0% 69.5%
3725269 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.62 50.0 4.38e-01 95.8% 55.8%
4028720 273.1.1.2 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.62 53.0 4.40e-01 97.2% 53.1%
3715810 304.47.1.2 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › FAZ1_cons 0.62 52.0 4.68e-01 98.6% 67.6%
3186853 881.1.1.2 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.61 51.0 3.85e-01 97.2% 58.9%
4017595 306.10.1.6 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF28980 0.61 55.0 4.54e-01 100.0% 99.2%
4020386 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.61 50.0 3.82e-01 97.2% 59.5%
3609518 101.1.1.491 alpha arrays › HTH › HTH › Three-helical HTH › FAZ1_cons 0.61 51.0 4.59e-01 100.0% 68.0%
5014544 304.8.1.82 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.61 52.0 4.22e-01 100.0% 59.3%
3705400 304.31.1.3 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase › FAZ1_cons 0.60 49.0 4.56e-01 97.2% 70.5%
4031950 304.4.1.73 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF4865 0.60 50.0 4.37e-01 95.8% 61.9%
3707104 878.1.1.3 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › FAZ1_cons 0.59 51.0 4.62e-01 100.0% 72.0%
5068348 11.12.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.58 50.0 3.91e-01 100.0% 44.2%
4659258 2003.1.5.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT 0.57 48.0 3.55e-01 100.0% 33.5%
3170528 206.1.1.28 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Haspin_kinase 0.56 50.0 3.27e-01 100.0% 37.7%
2901051 304.6.1.3 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.56 47.0 4.43e-01 100.0% 77.3%
3552777 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 49.0 2.85e-01 100.0% 17.4%
3902949 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 48.0 3.37e-01 100.0% 56.5%
4995792 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.55 49.0 3.54e-01 100.0% 87.4%
3194447 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 48.0 3.07e-01 100.0% 35.5%
3901366 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 46.0 3.02e-01 95.8% 35.6%
3694611 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 48.0 3.07e-01 100.0% 34.2%
4012647 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 48.0 3.06e-01 100.0% 39.7%
4854408 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.54 46.0 3.90e-01 98.6% 56.7%