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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00161

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00161

Identity

Kingdom:
phage

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-270
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12138.15 best Spherulin4 117.4 1.10e-33 96.2% 97.5%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1izjA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.77 73.0 5.91e-01 100.0% 97.2%
6d6wA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.76 72.0 6.58e-01 100.0% 93.7%
6y9tB01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.76 72.0 5.94e-01 100.0% 95.7%
2xhyD00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.76 71.0 5.63e-01 100.0% 97.2%
4s3jB02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.76 72.0 6.82e-01 100.0% 95.2%
3fn9A03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.75 71.0 6.46e-01 100.0% 93.0%
3alfA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.75 71.0 6.70e-01 100.0% 97.8%
3vnyA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.74 70.0 6.21e-01 100.0% 99.1%
1jakA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.74 70.0 6.25e-01 100.0% 98.1%
7pujA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.74 70.0 6.52e-01 100.0% 99.6%
4n6fA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.73 63.0 6.29e-01 100.0% 88.0%
2aqwA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 59.0 5.25e-01 84.7% 67.9%
4kruA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.72 56.0 5.83e-01 97.9% 86.9%
4pmxA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.71 67.0 6.07e-01 100.0% 96.1%
3a24A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 67.0 6.32e-01 100.0% 93.8%
6gs8A01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.70 65.0 6.00e-01 99.6% 83.6%
3px5A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.70 60.0 5.93e-01 99.6% 86.6%
6ia6A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 51.0 4.93e-01 75.3% 100.0%
7fc0E01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.68 64.0 6.16e-01 99.6% 99.6%
6arhA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 63.0 5.77e-01 97.9% 98.3%
2g0wB00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.68 63.0 5.92e-01 100.0% 94.7%
3tc3B00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.67 62.0 5.79e-01 100.0% 98.6%
1dqwA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 61.0 5.80e-01 100.0% 84.3%
4qhrA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.67 54.0 5.71e-01 96.2% 95.2%
4ff5A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.66 55.0 5.58e-01 100.0% 88.5%
3nqbA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.66 61.0 6.00e-01 100.0% 93.9%
3bwwA01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.65 61.0 5.99e-01 100.0% 93.3%
4v15A02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.65 56.0 5.75e-01 96.6% 95.1%
4hylA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.64 31.0 4.33e-01 84.3% 92.9%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.64 59.0 5.28e-01 100.0% 95.2%
5jx5A00 3.20.20.40 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase 0.62 56.0 5.08e-01 97.9% 98.4%
2h9aA01 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.60 57.0 5.52e-01 100.0% 96.5%
4xc7B01 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.59 33.0 4.23e-01 78.3% 90.3%
3kp1A04 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.59 35.0 4.29e-01 77.9% 90.7%
1lu4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 29.0 3.71e-01 99.6% 80.6%
1j6uA03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.58 34.0 4.30e-01 97.9% 100.0%
2yweA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 35.0 4.19e-01 86.8% 89.5%
1mkyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 35.0 4.27e-01 74.5% 98.0%
1qv9A01 3.40.50.10830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 0.53 34.0 4.15e-01 75.7% 97.4%
2b4qB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 42.0 4.16e-01 86.4% 79.8%
1cpyA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 47.0 4.11e-01 97.0% 97.7%
1lhpA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 43.0 3.97e-01 88.5% 99.3%
2cxxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 4.19e-01 86.4% 96.7%
3e48A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 37.0 4.17e-01 99.1% 97.8%
1xu9C00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 41.0 4.00e-01 85.1% 93.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4533878 2002.1.1.163 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Spherulin4 0.91 87.0 8.74e-01 100.0% 98.3%
5024862 2002.1.1.163 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Spherulin4 0.90 81.0 7.86e-01 100.0% 85.5%
1687164 2002.1.1.163 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Spherulin4 0.87 85.0 8.21e-01 100.0% 96.1%
4021602 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.76 72.0 6.18e-01 100.0% 94.4%
4039088 2002.1.1.146 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.76 71.0 6.09e-01 100.0% 93.9%
3200621 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.75 72.0 6.07e-01 100.0% 95.9%
3256189 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.75 71.0 6.07e-01 100.0% 91.7%
3255157 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.75 61.0 5.94e-01 84.3% 100.0%
364387 2002.1.1.8 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase 0.75 70.0 6.36e-01 100.0% 87.7%
5001803 2002.1.1.445 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dimeth_Pyl 0.74 70.0 5.49e-01 100.0% 66.1%
5023954 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.73 69.0 6.33e-01 100.0% 82.7%
4982681 2002.1.1.131 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › 4HFCP_synth 0.73 69.0 6.90e-01 100.0% 98.7%
4955396 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.72 68.0 6.51e-01 99.6% 98.1%
4976138 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.72 68.0 6.02e-01 100.0% 92.7%
4479401 2002.1.1.234 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2+Meth_synt_1 0.72 67.0 5.65e-01 100.0% 92.5%
5082646 2002.1.1.157 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Rv2525c_GlyHyd-like 0.71 53.0 5.87e-01 97.9% 95.7%
432902 2002.1.1.174 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.71 62.0 6.14e-01 100.0% 88.6%
5071446 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.71 66.0 6.08e-01 100.0% 96.6%
5064016 2002.1.1.55 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 0.71 56.0 6.00e-01 100.0% 95.5%
3604553 2002.1.1.126 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C 0.69 60.0 5.37e-01 90.6% 88.9%
4992536 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.69 57.0 5.06e-01 86.4% 82.2%
5042335 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.68 64.0 6.35e-01 99.6% 99.2%
5070822 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.68 62.0 6.02e-01 99.1% 99.2%
4029214 2002.1.1.126 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C 0.68 55.0 4.82e-01 85.1% 89.1%
4014373 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 63.0 5.85e-01 100.0% 82.7%
4382435 2002.1.1.29 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.68 63.0 5.75e-01 99.1% 97.0%
5018576 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 56.0 5.00e-01 86.4% 73.8%
5028848 2002.1.1.452 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C 0.67 59.0 5.07e-01 91.9% 100.0%
3270479 2002.1.1.290 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 0.67 54.0 5.74e-01 100.0% 95.1%
3481070 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.67 63.0 5.52e-01 100.0% 87.6%
5051176 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.67 61.0 5.32e-01 97.9% 86.0%
3244695 2002.1.1.290 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF31264 0.67 55.0 5.88e-01 100.0% 99.5%
4931554 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.66 59.0 5.92e-01 100.0% 93.6%
5074464 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 50.0 4.80e-01 77.0% 89.4%
4958621 2002.1.1.118 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › UvdE 0.66 61.0 5.84e-01 100.0% 98.9%
4946243 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.66 61.0 5.35e-01 97.9% 88.1%
5023953 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.66 61.0 5.46e-01 97.9% 92.7%
5049947 2002.1.1.452 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM_C 0.65 59.0 5.00e-01 95.7% 87.7%
4961513 2002.1.1.60 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.65 60.0 5.85e-01 99.1% 97.3%
3603630 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.65 59.0 5.19e-01 97.9% 84.9%
4289388 2002.1.1.83 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.65 61.0 5.27e-01 100.0% 72.6%
5016201 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.64 58.0 5.09e-01 97.9% 85.8%
5053237 2002.1.1.176 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEP_mutase 0.58 53.0 4.01e-01 97.4% 43.6%
3254129 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 34.0 4.12e-01 86.8% 88.7%
4947164 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 37.0 4.29e-01 86.4% 91.8%
3241095 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.54 45.0 4.12e-01 88.1% 96.8%
4680383 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.54 35.0 3.90e-01 74.5% 82.2%
None 0.53 37.0 4.15e-01 86.4% 91.1%
4195504 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.53 48.0 4.56e-01 96.6% 97.5%
4547691 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 37.0 4.22e-01 86.0% 95.4%
2879277 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.52 40.0 4.03e-01 86.4% 77.8%
4971115 2002.4.1.2 a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › QRPTase_C 0.51 44.0 4.13e-01 93.2% 98.3%
4185275 2004.1.1.474 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1 0.51 36.0 3.90e-01 86.4% 84.0%
134054 2003.1.1.69 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 0.51 41.0 4.02e-01 86.0% 81.9%
3789106 7514.1.1.3 a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 0.50 35.0 3.95e-01 93.2% 91.7%
3717060 7573.1.1.2 a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran_N 0.50 40.0 4.35e-01 99.1% 99.5%
D2 medium residues 364-453
PDB
Domain cluster: representative