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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00171
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00171
Identity
- Kingdom:
- phage
Quality
71.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-92
D2
high
residues 109-224
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j3lA03 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.52 | 40.0 | 3.71e-01 | 81.0% | 85.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036382 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.66 | 20.0 | 2.68e-01 | 87.1% | 44.6% |
| 2578927 | 327.13.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › PrgH | 0.64 | 20.0 | 2.66e-01 | 88.8% | 47.1% |
| 7256 | 208.4.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain › Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain › ManC_GMP_beta-helix | 0.53 | 28.0 | 3.54e-01 | 100.0% | 88.1% |
| 4945782 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.51 | 37.0 | 3.61e-01 | 75.0% | 86.0% |
D3
high
residues 235-351
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o0wA01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.76 | 65.0 | 5.84e-01 | 89.7% | 94.2% |
| 3n3wA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.76 | 63.0 | 5.89e-01 | 88.0% | 97.9% |
| 2qvwA04 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.75 | 60.0 | 5.54e-01 | 83.8% | 99.3% |
| 7r97A01 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.75 | 62.0 | 5.74e-01 | 88.0% | 92.6% |
| 4a15A03 | 1.10.275.40 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.57 | 31.0 | 2.96e-01 | 74.4% | 42.1% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.56 | 36.0 | 3.86e-01 | 88.0% | 75.8% |
| 6xy4A01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.56 | 36.0 | 3.62e-01 | 100.0% | 61.8% |
| 2gytA01 | 1.10.287.2070 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 28.0 | 3.46e-01 | 98.3% | 80.3% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.54 | 28.0 | 3.38e-01 | 88.0% | 75.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610952 | 171.1.1.0 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like | 0.73 | 60.0 | 5.93e-01 | 87.2% | 82.4% |
| 3971697 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.53 | 41.0 | 3.50e-01 | 100.0% | 49.0% |
| 3814012 | 601.7.1.66 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › CPP1-like | 0.50 | 37.0 | 3.81e-01 | 82.1% | 82.4% |