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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00204

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00204

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 113-164
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.47e-01 94.2% 74.4%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.34e-01 94.2% 59.9%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.48e-01 92.3% 65.8%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.38e-01 94.2% 79.8%
2gliA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 31.0 3.47e-01 90.4% 93.9%
1m5yA01 1.10.4030.10 Mainly Alpha › Orthogonal Bundle › Triger factor/SurA peptide-binding fold › Porin chaperone SurA, peptide-binding domain 0.50 36.0 2.95e-01 84.6% 37.1%
1zjjA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 34.0 2.69e-01 75.0% 31.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4666985 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 42.0 3.43e-01 73.1% 51.0%
3254528 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 46.0 4.10e-01 88.5% 62.5%
4389819 101.1.1.8 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TEA 0.57 41.0 3.38e-01 78.8% 60.0%
3477885 109.1.1.29 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Tom37+GST_C_6 0.55 39.0 2.56e-01 75.0% 24.7%
3710606 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.50 40.0 3.04e-01 92.3% 67.4%
D2 medium residues 10-41
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.86 62.0 4.84e-01 78.1% 37.3%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.86 70.0 5.59e-01 100.0% 47.5%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 74.0 5.15e-01 96.9% 47.9%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.83 66.0 5.94e-01 100.0% 62.2%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 70.0 5.10e-01 96.9% 40.2%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 69.0 5.05e-01 96.9% 54.7%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 70.0 4.61e-01 96.9% 29.5%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 68.0 5.13e-01 96.9% 55.7%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 69.0 5.37e-01 96.9% 53.5%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 65.0 4.87e-01 100.0% 36.3%
4u7bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 66.0 6.34e-01 96.9% 87.2%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.82 70.0 5.74e-01 96.9% 53.4%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 66.0 4.93e-01 96.9% 38.8%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 68.0 5.46e-01 96.9% 54.0%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 66.0 5.13e-01 96.9% 43.1%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.80 69.0 4.01e-01 100.0% 76.9%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 69.0 5.53e-01 100.0% 52.4%
1ku3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 70.0 5.61e-01 100.0% 54.1%
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 64.0 5.50e-01 96.9% 65.5%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 66.0 5.09e-01 96.9% 52.1%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 65.0 4.27e-01 96.9% 27.5%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 70.0 5.50e-01 100.0% 50.0%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 69.0 4.76e-01 100.0% 30.5%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 70.0 5.53e-01 100.0% 50.8%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 65.0 5.31e-01 96.9% 54.0%
2di3A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 65.0 5.00e-01 96.9% 54.7%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 69.0 5.64e-01 100.0% 55.2%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 65.0 4.97e-01 96.9% 49.3%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 67.0 5.61e-01 100.0% 57.1%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 67.0 5.30e-01 100.0% 83.3%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 66.0 5.16e-01 100.0% 45.7%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.77 66.0 3.98e-01 100.0% 15.5%
5zr6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 61.0 5.17e-01 96.9% 66.1%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 60.0 5.28e-01 93.8% 65.4%
2ba3A01 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.77 53.0 5.44e-01 75.0% 82.8%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 64.0 4.91e-01 100.0% 42.7%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 62.0 4.58e-01 93.8% 47.1%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 62.0 5.19e-01 100.0% 53.3%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 58.0 4.90e-01 96.9% 58.1%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 57.0 3.86e-01 96.9% 26.2%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 4.72e-01 96.9% 46.1%
2gloA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 58.0 4.96e-01 96.9% 59.3%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 59.0 5.23e-01 100.0% 62.5%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 56.0 4.77e-01 96.9% 55.7%
1biaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 57.0 4.75e-01 96.9% 53.1%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 60.0 3.69e-01 96.9% 40.0%
3eetA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 4.47e-01 93.8% 61.5%
3py8A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.71 53.0 3.56e-01 93.8% 24.3%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.70 58.0 3.34e-01 90.6% 90.1%
5zl6A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.70 60.0 3.89e-01 100.0% 76.8%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 4.25e-01 93.8% 54.8%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 54.0 3.66e-01 96.9% 23.9%
1fi2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 55.0 3.40e-01 96.9% 15.9%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.67 52.0 4.95e-01 93.8% 95.1%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.63 50.0 3.29e-01 100.0% 30.2%
3rd8A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.54 43.0 3.83e-01 100.0% 100.0%
4f78A01 3.30.200.180 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.54 37.0 2.83e-01 78.1% 22.1%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073915 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.87 68.0 6.61e-01 84.4% 77.1%
3783280 221.1.2.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif 0.87 61.0 4.26e-01 75.0% 25.3%
4966030 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.86 71.0 5.74e-01 100.0% 50.0%
3977689 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.86 65.0 5.07e-01 84.4% 40.0%
4010073 101.1.2.368 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.84 75.0 5.57e-01 100.0% 49.3%
3976327 101.1.9.41 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.84 61.0 5.53e-01 81.2% 57.8%
4931278 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 71.0 5.99e-01 96.9% 64.2%
3962667 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 69.0 5.84e-01 96.9% 65.5%
5004272 101.1.9.41 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.83 61.0 5.12e-01 81.2% 47.3%
3283527 101.1.3.1 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.82 72.0 5.31e-01 100.0% 40.0%
3799849 101.1.1.161 ↗ alpha arrays › HTH › HTH › Three-helical HTH › NPR2 0.81 72.0 5.80e-01 100.0% 93.3%
3965440 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 63.0 5.32e-01 87.5% 50.9%
4391471 101.1.1.29 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r3 0.80 67.0 5.65e-01 96.9% 70.9%
5027754 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 68.0 5.87e-01 96.9% 80.0%
5027753 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 69.0 6.23e-01 100.0% 73.3%
3962903 101.1.2.486 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_58 0.79 68.0 6.34e-01 96.9% 85.0%
4940480 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.79 67.0 5.61e-01 96.9% 65.5%
3302248 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 68.0 5.93e-01 100.0% 70.0%
5062343 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 70.0 5.99e-01 100.0% 68.0%
3961937 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 61.0 5.15e-01 87.5% 50.9%
3724162 101.1.1.216 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_8 0.78 64.0 5.65e-01 90.6% 82.2%
1393483 101.1.2.152 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_47 0.77 67.0 5.30e-01 100.0% 83.3%
3967719 101.1.1.18 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.76 62.0 5.46e-01 96.9% 66.0%
3590401 375.1.1.90 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ISL3 0.75 64.0 4.17e-01 100.0% 22.1%
5042712 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.75 64.0 4.47e-01 100.0% 39.0%
3647768 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.69 54.0 4.97e-01 93.8% 82.2%
D3 medium residues 50-97
PDB
Domain cluster: representative