←Back to structures

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00213

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00213

Identity

Kingdom:
phage

Quality

77.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 310-489
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d53A00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.77 55.0 6.38e-01 85.6% 97.7%
5vhgA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.77 62.0 6.80e-01 92.2% 99.3%
5jysA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.74 56.0 6.28e-01 91.1% 99.3%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.68 36.0 4.04e-01 90.6% 64.3%
1qnxA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.67 59.0 5.58e-01 92.8% 82.8%
1u53A00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.64 55.0 5.41e-01 90.6% 86.5%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.58 25.0 3.27e-01 76.1% 70.8%
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.56 37.0 4.07e-01 70.0% 82.2%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022449 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.86 59.0 5.57e-01 88.9% 59.5%
3235186 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.85 51.0 6.60e-01 80.6% 100.0%
3992804 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.82 50.0 6.39e-01 82.2% 100.0%
3939771 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.79 60.0 6.75e-01 90.6% 97.9%
3477325 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.78 62.0 6.61e-01 91.7% 92.4%
3239073 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.78 59.0 6.72e-01 91.7% 100.0%
3478962 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.78 62.0 6.50e-01 92.2% 89.7%
1697211 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.77 55.0 6.38e-01 85.6% 97.7%
3495541 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.77 62.0 6.76e-01 92.2% 98.7%
3412746 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.77 60.0 6.57e-01 92.2% 96.0%
3930029 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.77 60.0 6.72e-01 92.2% 100.0%
3398052 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.77 60.0 6.45e-01 91.7% 92.9%
3952808 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.77 56.0 6.49e-01 86.1% 100.0%
3934681 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.77 57.0 5.57e-01 86.1% 70.3%
3812911 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.76 58.0 6.57e-01 90.0% 100.0%
3931518 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.76 57.0 6.48e-01 90.0% 98.6%
4081037 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.76 60.0 6.64e-01 90.0% 100.0%
3915349 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.76 61.0 6.34e-01 92.8% 87.6%
3926346 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.76 60.0 6.55e-01 95.0% 98.0%
3963099 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.75 55.0 6.34e-01 87.2% 100.0%
3928387 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.75 62.0 6.72e-01 90.0% 100.0%
3492008 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.75 58.0 6.50e-01 90.0% 99.3%
3933163 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.75 61.0 5.77e-01 94.4% 72.6%
3937257 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.74 59.0 6.41e-01 95.0% 97.3%
4942971 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.74 61.0 6.31e-01 83.9% 100.0%
3938651 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.74 60.0 6.28e-01 94.4% 91.4%
3312180 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.74 57.0 6.19e-01 90.6% 92.3%
3220818 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.74 65.0 6.53e-01 95.6% 90.2%
3405770 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.74 60.0 6.51e-01 94.4% 98.7%
3928013 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.74 59.0 6.22e-01 94.4% 90.3%
3374333 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.74 58.0 6.30e-01 91.1% 96.0%
3586795 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.73 62.0 6.24e-01 92.8% 86.8%
3926699 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.73 59.0 5.95e-01 94.4% 82.8%
3758929 273.1.1.2 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.73 51.0 5.95e-01 86.7% 98.5%
3489902 864.1.1.8 ↗ a+b two layers › DLC › DLC › DLC › CEP76_C 0.73 50.0 5.85e-01 86.7% 96.9%
3499933 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.72 50.0 5.83e-01 87.2% 97.7%
5015571 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.72 58.0 6.35e-01 83.3% 100.0%
3882395 864.1.1.8 ↗ a+b two layers › DLC › DLC › DLC › CEP76_C 0.72 51.0 5.83e-01 87.2% 96.3%
3616880 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.72 65.0 6.45e-01 95.6% 93.2%
3449329 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.71 58.0 6.15e-01 91.7% 94.4%
3393563 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.70 61.0 5.61e-01 91.1% 77.3%
3470151 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.70 60.0 6.37e-01 92.2% 100.0%
3533799 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.70 59.0 5.94e-01 92.2% 87.6%
3516235 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.69 61.0 5.84e-01 91.1% 89.5%
3992937 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.69 59.0 6.16e-01 89.4% 97.0%
4001475 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.69 60.0 5.78e-01 91.7% 86.3%
3415251 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.68 59.0 5.44e-01 90.6% 77.3%
3888642 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.68 60.0 5.86e-01 93.3% 86.2%
3509464 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.67 55.0 5.77e-01 86.1% 92.7%
3510354 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.67 59.0 5.79e-01 92.2% 86.8%
3541869 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.67 57.0 5.60e-01 91.7% 82.6%
4012829 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.67 57.0 6.01e-01 93.9% 98.2%
3495494 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.66 54.0 5.74e-01 87.2% 94.4%
3416151 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.66 58.0 6.05e-01 91.1% 100.0%
3859790 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.66 60.0 5.66e-01 97.2% 88.8%
3491533 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.64 53.0 5.50e-01 91.7% 91.2%
3486427 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.63 52.0 5.52e-01 91.7% 98.1%
1916704 872.12.1.1 ↗ a+b two layers › Dodecin subunit-like › Francisella virulence factor › Francisella virulence factor › PF30739 0.63 32.0 4.01e-01 78.3% 81.0%
3873301 273.1.1.1 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP 0.62 54.0 5.38e-01 96.1% 89.9%
3222786 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.58 44.0 4.66e-01 91.1% 88.6%
D2 medium residues 57-213_707-721
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vkgA12 1.10.287.2610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 52.0 4.81e-01 95.3% 96.3%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.57 53.0 4.26e-01 98.8% 98.4%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 35.0 3.49e-01 95.9% 64.2%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.50 34.0 3.22e-01 98.3% 58.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4930606 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.79 55.0 4.25e-01 70.3% 51.4%
5025381 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.69 51.0 4.10e-01 76.2% 54.5%
3696958 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 59.0 4.19e-01 98.3% 91.8%
3958570 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.60 56.0 5.34e-01 97.7% 98.5%
3832457 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.59 56.0 4.94e-01 99.4% 84.7%
3953720 5086.1.1.221 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › MMPL 0.59 55.0 5.20e-01 98.8% 97.0%
4988623 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.58 55.0 4.65e-01 99.4% 85.7%
4940954 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.58 55.0 4.54e-01 99.4% 72.5%
4992667 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 55.0 4.56e-01 99.4% 67.6%
3256420 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.57 54.0 4.55e-01 99.4% 81.5%
5040665 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.57 53.0 3.56e-01 97.7% 42.6%
5082020 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.55 48.0 3.64e-01 90.1% 100.0%
4022230 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.55 50.0 3.79e-01 96.5% 98.9%
4984240 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 51.0 3.46e-01 98.8% 41.8%
3615971 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 49.0 4.74e-01 94.8% 87.4%
4955963 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 51.0 4.80e-01 100.0% 95.0%
3825615 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.53 38.0 2.35e-01 72.1% 73.9%
3611166 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.52 48.0 4.58e-01 99.4% 97.0%
3678791 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.51 47.0 4.35e-01 96.5% 100.0%
3165834 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.51 47.0 4.01e-01 96.5% 76.9%
5040840 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 47.0 3.06e-01 99.4% 27.9%
3205388 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 47.0 4.17e-01 99.4% 84.7%
3251434 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.50 43.0 4.29e-01 99.4% 86.7%
D3 medium residues 214-270_527-706
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.73 51.0 4.67e-01 70.5% 71.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5062807 1203.1.2.0 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 0.83 53.0 4.15e-01 74.7% 33.6%
4001189 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.82 56.0 4.39e-01 88.2% 35.6%
3294656 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.78 55.0 4.65e-01 71.3% 71.9%
3935064 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 53.0 4.88e-01 70.5% 58.0%
4324117 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.75 53.0 4.58e-01 70.9% 73.4%
3782322 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.74 53.0 4.09e-01 72.2% 86.3%
4001188 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 53.0 4.25e-01 73.8% 79.8%
4569106 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.72 59.0 4.58e-01 84.0% 60.4%
5014331 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.70 50.0 3.47e-01 72.6% 64.1%
4191276 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 49.0 3.47e-01 72.6% 60.1%
3795763 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 52.0 4.05e-01 80.2% 84.3%
3263540 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 37.0 2.98e-01 92.8% 29.9%
4645599 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.64 52.0 4.53e-01 85.2% 64.8%
4989878 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.61 47.0 3.45e-01 78.1% 69.8%
4125652 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 57.0 4.55e-01 100.0% 68.5%
4396994 3755.3.1.305 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.56 44.0 3.00e-01 81.0% 31.8%