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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00232
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00232
Identity
- Kingdom:
- phage
Quality
62.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-81
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03477.22 best | ATP-cone | 52.3 | 9.70e-14 | 96.2% | 76.1% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dznF00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 49.0 | 5.21e-01 | 100.0% | 79.7% |
| 1t6jA03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.69 | 53.0 | 4.87e-01 | 98.7% | 64.1% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 48.0 | 4.74e-01 | 79.7% | 73.5% |
| 1sg7A00 | 1.10.1740.70 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB | 0.64 | 46.0 | 4.71e-01 | 79.7% | 78.7% |
| 1sxjA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 43.0 | 4.53e-01 | 97.5% | 77.8% |
| 7dfeA01 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.64 | 50.0 | 4.36e-01 | 91.1% | 54.3% |
| 4d81A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 47.0 | 4.44e-01 | 100.0% | 66.0% |
| 1n5uA04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.62 | 50.0 | 4.90e-01 | 93.7% | 82.6% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.61 | 47.0 | 4.83e-01 | 96.2% | 88.2% |
| 4rayA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.61 | 31.0 | 3.65e-01 | 75.9% | 70.0% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 43.0 | 4.32e-01 | 77.2% | 73.4% |
| 1gq2A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 53.0 | 3.62e-01 | 100.0% | 79.3% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 42.0 | 4.28e-01 | 77.2% | 77.3% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.59 | 41.0 | 4.17e-01 | 72.2% | 75.6% |
| 1w5sA01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 52.0 | 5.10e-01 | 100.0% | 98.9% |
| 2fq4A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 47.0 | 4.03e-01 | 93.7% | 71.5% |
| 4jkzA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 48.0 | 3.74e-01 | 94.9% | 53.1% |
| 3zheD01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 40.0 | 2.97e-01 | 73.4% | 42.4% |
| 2qupA00 | 1.20.120.490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain | 0.57 | 45.0 | 4.01e-01 | 89.9% | 77.3% |
| 1ng6A01 | 1.10.1510.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Uncharacterised protein YqeY/AIM41, N-terminal domain | 0.56 | 41.0 | 3.92e-01 | 81.0% | 65.9% |
| 1ghhA00 | 3.30.910.10 | Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › DinI-like | 0.56 | 49.0 | 4.93e-01 | 96.2% | 96.3% |
| 2rkvA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.56 | 46.0 | 3.41e-01 | 92.4% | 79.5% |
| 3l6gA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 41.0 | 3.25e-01 | 77.2% | 84.0% |
| 1cjcA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 41.0 | 2.99e-01 | 78.5% | 71.0% |
| 5ceeA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 47.0 | 3.51e-01 | 100.0% | 90.9% |
| 7qpgW01 | 1.10.357.150 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.55 | 38.0 | 2.94e-01 | 72.2% | 41.6% |
| 3vayA02 | 1.20.120.1600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 39.0 | 3.84e-01 | 78.5% | 69.0% |
| 2j3tD01 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 49.0 | 4.10e-01 | 100.0% | 90.3% |
| 1kt8A01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.54 | 45.0 | 3.49e-01 | 94.9% | 45.7% |
| 1mg7A01 | 3.30.70.1000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Switch protein XOL-1, GHMP-like | 0.54 | 44.0 | 3.45e-01 | 91.1% | 77.7% |
| 4dqnA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.54 | 45.0 | 3.69e-01 | 96.2% | 53.8% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.53 | 41.0 | 4.13e-01 | 93.7% | 86.4% |
| 5u3fB01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.53 | 45.0 | 3.79e-01 | 96.2% | 60.7% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 37.0 | 3.79e-01 | 79.7% | 78.4% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 37.0 | 2.60e-01 | 74.7% | 90.5% |
| 4dwpA01 | 6.10.140.1780 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 35.0 | 3.39e-01 | 70.9% | 93.5% |
| 5c4yA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 44.0 | 3.67e-01 | 97.5% | 93.4% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4211419 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.88 | 82.0 | 7.09e-01 | 98.7% | 73.0% |
| 3946182 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.88 | 76.0 | 7.22e-01 | 98.7% | 80.0% |
| 3980780 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.88 | 76.0 | 7.21e-01 | 100.0% | 80.0% |
| 4160317 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.88 | 78.0 | 6.71e-01 | 100.0% | 64.3% |
| 4990404 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.88 | 67.0 | 6.12e-01 | 98.7% | 63.0% |
| 4466734 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.87 | 77.0 | 6.65e-01 | 100.0% | 64.3% |
| 3784313 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.87 | 69.0 | 6.58e-01 | 97.5% | 73.3% |
| 4957090 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.87 | 79.0 | 7.40e-01 | 100.0% | 81.1% |
| 4626373 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.86 | 75.0 | 6.78e-01 | 100.0% | 70.5% |
| 3989376 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.86 | 77.0 | 6.90e-01 | 96.2% | 71.4% |
| 1853272 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.85 | 69.0 | 6.30e-01 | 98.7% | 67.7% |
| 5057106 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.85 | 75.0 | 7.14e-01 | 97.5% | 82.2% |
| 4934727 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.84 | 75.0 | 7.02e-01 | 100.0% | 80.0% |
| 1878970 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.84 | 78.0 | 7.06e-01 | 100.0% | 77.7% |
| 3278241 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.84 | 72.0 | 6.37e-01 | 100.0% | 66.4% |
| 4681348 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.83 | 75.0 | 6.84e-01 | 96.2% | 78.0% |
| 4388542 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.83 | 73.0 | 6.67e-01 | 100.0% | 74.0% |
| 4895331 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.83 | 77.0 | 7.36e-01 | 100.0% | 87.8% |
| 2141738 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.83 | 75.0 | 6.96e-01 | 100.0% | 78.8% |
| 4588018 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.83 | 72.0 | 6.69e-01 | 100.0% | 76.8% |
| 4993731 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.82 | 72.0 | 6.53e-01 | 100.0% | 71.4% |
| 1878968 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.81 | 63.0 | 5.84e-01 | 97.5% | 66.0% |
| 4927666 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.81 | 74.0 | 6.82e-01 | 100.0% | 79.0% |
| 5034061 | 148.1.3.400 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ribonuc_red_lgN | 0.80 | 74.0 | 5.48e-01 | 100.0% | 41.6% |
| 4932763 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.78 | 63.0 | 6.34e-01 | 97.5% | 86.3% |
| 5051773 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.78 | 64.0 | 6.19e-01 | 100.0% | 78.9% |
| 3592370 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.75 | 47.0 | 4.06e-01 | 73.4% | 41.7% |
| 5080558 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.75 | 47.0 | 5.72e-01 | 78.5% | 100.0% |
| 3673805 | 148.1.3.285 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cyclin_C | 0.72 | 53.0 | 5.25e-01 | 82.3% | 74.1% |
| 5031461 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.71 | 56.0 | 5.76e-01 | 89.9% | 89.3% |
| 4998716 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 47.0 | 4.64e-01 | 100.0% | 67.1% |
| 4255370 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.66 | 50.0 | 5.24e-01 | 97.5% | 94.3% |
| 3270778 | 108.1.1.96 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 | 0.64 | 47.0 | 4.43e-01 | 79.7% | 97.0% |
| 5000867 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.64 | 50.0 | 4.28e-01 | 100.0% | 51.1% |
| 3701122 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.64 | 50.0 | 5.25e-01 | 100.0% | 97.1% |
| 3475867 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.64 | 52.0 | 5.31e-01 | 100.0% | 94.7% |
| 3610493 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 45.0 | 4.52e-01 | 100.0% | 75.0% |
| 4974454 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.63 | 47.0 | 3.29e-01 | 78.5% | 77.4% |
| 1628548 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.62 | 52.0 | 4.91e-01 | 100.0% | 76.8% |
| 4963148 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.61 | 44.0 | 4.27e-01 | 100.0% | 67.8% |
| 4031489 | 632.19.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 | 0.61 | 50.0 | 5.19e-01 | 97.5% | 97.3% |
| 3402127 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 45.0 | 4.31e-01 | 100.0% | 72.2% |
| 3402554 | 632.7.1.64 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Med15_C | 0.58 | 50.0 | 4.42e-01 | 91.1% | 97.3% |
| 2075033 | 3787.1.1.0 ↗ | alpha bundles › HAD superfamily helical bundle insertion domain | 0.58 | 40.0 | 4.10e-01 | 78.5% | 74.7% |
| 4014858 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 51.0 | 4.61e-01 | 100.0% | 71.8% |
| 3280478 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.57 | 48.0 | 3.90e-01 | 97.5% | 78.8% |
| 3676159 | 148.1.3.46 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6-ORC-like_ATPase_lid | 0.57 | 51.0 | 4.80e-01 | 100.0% | 93.7% |
| 3896352 | 632.6.1.14 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Med15_C | 0.57 | 48.0 | 4.33e-01 | 92.4% | 97.3% |
| 1349265 | 226.1.1.5 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › Skp1_POZ | 0.57 | 36.0 | 3.53e-01 | 96.2% | 58.6% |
| 3617495 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.57 | 37.0 | 3.75e-01 | 73.4% | 65.8% |
| 1180303 | 632.19.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › RICH | 0.57 | 47.0 | 4.66e-01 | 97.5% | 92.7% |
| 5012157 | 605.1.1.354 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 | 0.57 | 38.0 | 3.74e-01 | 75.9% | 63.5% |
| 1665816 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.55 | 42.0 | 4.26e-01 | 83.5% | 92.2% |
| 4259798 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.55 | 46.0 | 3.70e-01 | 96.2% | 52.1% |
| 3621302 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.54 | 45.0 | 3.56e-01 | 94.9% | 49.4% |
| 4680273 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.53 | 43.0 | 3.88e-01 | 92.4% | 93.0% |
| 4990303 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.50 | 41.0 | 3.38e-01 | 91.1% | 49.0% |
D2
medium
residues 86-166
D3
medium
residues 168-326
D4
medium
residues 327-417