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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00269

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00269

Identity

Kingdom:
phage

Quality

61.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 24-100
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.82 61.0 6.64e-01 77.9% 96.8%
2kpjA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 59.0 6.20e-01 76.6% 87.1%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 60.0 6.17e-01 77.9% 95.9%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.81 60.0 6.41e-01 77.9% 93.9%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 67.0 6.63e-01 92.2% 90.1%
3qf3D00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 58.0 4.85e-01 77.9% 57.8%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 55.0 5.68e-01 72.7% 81.7%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 60.0 5.90e-01 81.8% 89.0%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 64.0 5.73e-01 97.4% 65.0%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 57.0 5.71e-01 76.6% 87.0%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 60.0 6.41e-01 90.9% 97.0%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 61.0 6.44e-01 98.7% 95.7%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 58.0 6.23e-01 96.1% 93.9%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 56.0 5.87e-01 76.6% 87.0%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 54.0 5.49e-01 75.3% 78.9%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 56.0 5.47e-01 98.7% 70.9%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 52.0 5.42e-01 72.7% 81.9%
3g7dA04 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 60.0 5.70e-01 92.2% 72.5%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 54.0 5.97e-01 76.6% 96.7%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 55.0 5.39e-01 77.9% 78.8%
6b9sB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 52.0 5.38e-01 74.0% 80.8%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 55.0 5.82e-01 79.2% 97.0%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 57.0 6.06e-01 100.0% 94.1%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 57.0 5.80e-01 100.0% 85.3%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 60.0 5.67e-01 88.3% 85.7%
3f51C00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 59.0 5.60e-01 93.5% 77.8%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 59.0 5.94e-01 100.0% 90.8%
3mlfE00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 60.0 5.86e-01 100.0% 86.0%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 54.0 5.67e-01 100.0% 97.0%
1neqA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 51.0 5.21e-01 79.2% 82.4%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 53.0 5.16e-01 84.4% 79.3%
8dtqA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 56.0 5.58e-01 92.2% 85.4%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 38.0 4.75e-01 83.1% 91.5%
2hxiA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 33.0 3.64e-01 71.4% 57.8%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 54.0 5.42e-01 98.7% 90.9%
2fd5A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 33.0 4.00e-01 75.3% 83.3%
2mw8A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 41.0 4.35e-01 88.3% 79.1%
1b72A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 40.0 4.21e-01 85.7% 76.5%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 44.0 3.94e-01 79.2% 86.6%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 43.0 3.81e-01 79.2% 90.8%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 44.0 4.13e-01 83.1% 93.6%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 34.0 2.88e-01 83.1% 36.3%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.56 39.0 3.16e-01 72.7% 61.0%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.56 43.0 3.81e-01 81.8% 84.5%
4efcA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.54 38.0 4.09e-01 97.4% 95.1%
2da7A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.54 40.0 4.16e-01 87.0% 84.5%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.53 35.0 3.85e-01 75.3% 84.1%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.51 36.0 3.96e-01 80.5% 90.5%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590480 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.88 66.0 5.84e-01 77.9% 57.1%
3947329 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.85 65.0 7.01e-01 80.5% 96.9%
4380868 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.84 62.0 5.48e-01 77.9% 56.4%
4979598 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.84 61.0 6.35e-01 76.6% 82.9%
4952242 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.83 62.0 6.46e-01 77.9% 88.6%
4950501 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.83 60.0 6.50e-01 76.6% 89.2%
4818340 101.1.1.9 alpha arrays › HTH › HTH › Three-helical HTH › HTH_3 0.82 59.0 6.42e-01 75.3% 90.5%
3588965 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.82 69.0 5.75e-01 100.0% 54.8%
4956880 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.82 59.0 6.20e-01 76.6% 82.9%
431258 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.81 64.0 6.78e-01 88.3% 95.5%
4150908 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.81 60.0 5.39e-01 77.9% 57.1%
3591055 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.81 65.0 5.78e-01 100.0% 61.9%
4043777 101.1.4.16 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_25 0.80 62.0 5.88e-01 81.8% 80.0%
5039762 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.79 59.0 5.48e-01 79.2% 66.3%
3974103 101.1.4.16 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_25 0.78 63.0 6.14e-01 87.0% 85.9%
4945219 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 56.0 6.18e-01 79.2% 98.3%
3955282 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 53.0 5.43e-01 72.7% 78.7%
1181610 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 62.0 6.43e-01 100.0% 95.7%
4026045 101.1.4.85 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3, PF28877 0.76 53.0 5.85e-01 71.4% 91.7%
3980119 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.76 54.0 5.66e-01 74.0% 85.7%
5028787 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.76 58.0 5.87e-01 80.5% 86.7%
4530543 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.76 59.0 6.22e-01 90.9% 92.9%
1149503 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.76 54.0 5.49e-01 75.3% 78.9%
3969553 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.75 59.0 5.97e-01 100.0% 86.7%
3952098 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 55.0 5.43e-01 76.6% 75.0%
None 0.75 52.0 5.32e-01 72.7% 78.7%
4997274 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 56.0 4.32e-01 81.8% 40.6%
5057414 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 56.0 5.84e-01 89.6% 90.0%
4410932 101.1.4.27 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.73 55.0 5.76e-01 81.8% 92.9%
3288109 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.73 58.0 6.06e-01 87.0% 95.7%
166410 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.71 59.0 5.94e-01 100.0% 90.8%
4124125 101.1.4.27 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.68 55.0 4.96e-01 89.6% 80.9%
1772495 10.12.1.118 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30252 0.66 60.0 4.28e-01 100.0% 43.6%
3999292 101.1.4.27 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.66 52.0 5.13e-01 88.3% 83.5%
3283971 873.1.1.7 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.65 57.0 4.30e-01 100.0% 72.0%
3973641 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.65 57.0 4.31e-01 100.0% 74.9%
3972907 873.1.1.7 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.62 53.0 4.05e-01 100.0% 94.5%
3967135 873.1.1.7 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.62 53.0 3.99e-01 100.0% 92.2%
3281241 873.1.1.7 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.60 50.0 3.87e-01 100.0% 74.0%
4015134 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.59 42.0 3.92e-01 77.9% 60.0%
2542 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.59 35.0 3.70e-01 79.2% 64.8%
4938001 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.58 32.0 3.05e-01 84.4% 43.2%
3971393 873.1.1.7 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.58 49.0 3.76e-01 98.7% 92.3%
3955346 873.1.1.7 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › Arabinose_bd 0.58 48.0 3.73e-01 100.0% 73.5%
1212365 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.57 35.0 3.84e-01 79.2% 75.0%
3279079 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.56 35.0 3.48e-01 83.1% 60.0%
3837816 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 37.0 3.23e-01 87.0% 44.2%
1780091 4016.1.1.1 alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.55 35.0 2.82e-01 87.0% 31.6%
4932829 4016.1.1.1 alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.54 34.0 2.81e-01 84.4% 33.8%
3269226 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.51 39.0 4.00e-01 90.9% 84.0%
3596050 3697.1.1.0 alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain 0.51 38.0 3.71e-01 79.2% 72.9%
D2 medium residues 111-157
PDB