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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00275

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00275

Identity

Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-134_270-300
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 27.0 3.26e-01 71.3% 67.1%
3gcgB00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.54 39.0 3.55e-01 75.0% 71.7%
1ichA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.53 40.0 4.37e-01 93.5% 98.9%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.53 47.0 3.76e-01 100.0% 55.4%
2yyiA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 37.0 3.04e-01 73.1% 87.2%
2of5H00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 38.0 3.98e-01 96.3% 84.0%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.51 39.0 3.47e-01 79.6% 90.9%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589134 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.94 91.0 7.66e-01 100.0% 85.5%
4086001 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.83 77.0 6.47e-01 100.0% 86.9%
4288554 589.1.1.5 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › Trigger_C 0.83 76.0 6.59e-01 98.1% 84.4%
4205976 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.81 73.0 6.33e-01 98.1% 91.9%
4109117 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.79 72.0 6.12e-01 98.1% 81.8%
4663739 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.78 71.0 6.08e-01 100.0% 84.1%
4471233 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.76 69.0 6.12e-01 99.1% 85.8%
4176653 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.76 67.0 5.82e-01 95.4% 87.5%
3614473 1075.4.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold 0.55 46.0 3.32e-01 92.6% 85.0%
D2 high residues 150-241
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13145.13 best Rotamase_2 31.1 5.10e-07 98.9% 63.6%
PF00639.28 Rotamase 22.7 2.20e-04 85.9% 67.7%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5tvlA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.90 86.0 8.24e-01 100.0% 93.1%
1jnsA00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.80 72.0 7.22e-01 100.0% 96.7%
2kgjA00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.78 70.0 6.81e-01 100.0% 87.3%
4dt4A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.74 58.0 6.24e-01 100.0% 97.5%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 41.0 4.40e-01 100.0% 68.8%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.65 39.0 3.90e-01 95.7% 59.1%
4l3nA02 2.20.210.30 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.62 41.0 4.65e-01 97.8% 94.0%
3drxB03 3.30.70.2000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 33.0 4.15e-01 97.8% 92.2%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 36.0 3.71e-01 97.8% 58.2%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 35.0 3.76e-01 98.9% 65.3%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 36.0 3.64e-01 100.0% 57.6%
3fgvA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 35.0 3.53e-01 98.9% 57.0%
3hx9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 36.0 3.60e-01 100.0% 57.1%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 34.0 3.34e-01 97.8% 51.5%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 36.0 3.52e-01 98.9% 54.9%
3rgfA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 36.0 3.59e-01 98.9% 59.4%
3e8oB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 34.0 3.34e-01 97.8% 53.0%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 36.0 3.55e-01 97.8% 57.7%
4hl9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 34.0 3.41e-01 97.8% 56.4%
4qzvB02 2.20.210.30 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.57 39.0 4.36e-01 98.9% 97.1%
1y0hB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 35.0 3.48e-01 97.8% 57.1%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 36.0 3.59e-01 100.0% 60.2%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 33.0 3.53e-01 97.8% 64.6%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.36e-01 100.0% 84.2%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 33.0 3.26e-01 97.8% 53.6%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 31.0 3.30e-01 96.7% 62.0%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 3.40e-01 98.9% 59.2%
2fb0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 33.0 3.31e-01 97.8% 58.5%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 4.30e-01 100.0% 93.6%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.53 33.0 3.27e-01 97.8% 58.3%
3vg8A00 3.30.200.270 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.53 35.0 3.44e-01 100.0% 61.0%
3smzA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 30.0 2.98e-01 93.5% 52.6%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 33.0 3.15e-01 97.8% 50.9%
2gffA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 32.0 3.18e-01 97.8% 57.3%
3onrJ00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.52 31.0 3.57e-01 95.7% 80.9%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 32.0 3.29e-01 100.0% 63.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3590821 284.1.1.7 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 0.97 94.0 9.06e-01 100.0% 97.0%
4119493 284.1.1.3 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase 0.96 92.0 8.53e-01 100.0% 88.2%
4337921 284.1.1.7 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 0.92 88.0 8.33e-01 100.0% 90.5%
4946902 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.90 84.0 8.54e-01 100.0% 100.0%
3164735 284.1.1.7 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 0.88 82.0 5.77e-01 100.0% 36.7%
3801691 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.86 83.0 8.18e-01 100.0% 98.9%
3973525 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.86 79.0 7.90e-01 100.0% 95.7%
4339408 284.1.1.3 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase 0.86 81.0 8.01e-01 98.9% 96.8%
4367583 284.1.1.8 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 0.86 82.0 7.91e-01 100.0% 93.0%
4460780 284.1.1.3 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase 0.85 81.0 7.88e-01 100.0% 93.0%
4011826 284.1.1.8 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 0.85 81.0 7.79e-01 100.0% 89.3%
3980862 284.1.1.3 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase 0.84 77.0 7.65e-01 100.0% 93.7%
4010521 284.1.1.7 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 0.83 75.0 4.92e-01 100.0% 25.4%
3944314 284.1.1.8 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 0.82 75.0 7.46e-01 100.0% 93.7%
4266766 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.81 76.0 5.38e-01 100.0% 38.4%
3964206 284.1.1.7 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 0.80 70.0 7.09e-01 100.0% 95.6%
3969314 284.1.1.3 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase 0.79 75.0 7.41e-01 100.0% 96.8%
3963298 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.79 73.0 7.13e-01 100.0% 94.0%
4186987 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.74 65.0 6.63e-01 100.0% 97.8%
4229895 589.1.1.2 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3 0.73 64.0 4.53e-01 100.0% 32.1%
3838346 589.1.1.19 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › Rotamase_2 0.72 67.0 4.86e-01 100.0% 40.4%
3621982 304.55.1.5 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Viral_Rep 0.71 39.0 3.73e-01 96.7% 45.5%
2488229 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.68 39.0 4.18e-01 97.8% 66.2%
3991844 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 42.0 4.07e-01 97.8% 59.0%
3948321 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.65 57.0 5.34e-01 97.8% 99.1%
4206398 589.1.1.0 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain 0.65 57.0 4.24e-01 100.0% 44.4%
5053186 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.65 59.0 5.32e-01 100.0% 76.0%
3978726 284.1.1.7 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 0.65 57.0 4.96e-01 100.0% 93.8%
4661756 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.63 48.0 5.25e-01 97.8% 100.0%
4027543 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 36.0 3.72e-01 98.9% 58.9%
4976589 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.62 44.0 4.43e-01 97.8% 72.6%
3281048 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.61 39.0 3.84e-01 100.0% 60.2%
169847 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.60 35.0 3.52e-01 98.9% 56.4%
3949124 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.60 35.0 3.48e-01 97.8% 55.8%
4928432 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.59 34.0 3.44e-01 97.8% 55.8%
3967987 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.59 39.0 3.66e-01 100.0% 56.4%
3603759 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.58 46.0 4.40e-01 98.9% 72.4%
1039103 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.58 34.0 3.41e-01 97.8% 55.8%
3721344 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.57 35.0 3.52e-01 100.0% 60.0%
134566 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.56 35.0 3.52e-01 98.9% 59.4%
4941817 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 37.0 3.57e-01 97.8% 57.8%
3725076 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 34.0 3.25e-01 97.8% 51.4%
3513459 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.55 34.0 3.26e-01 98.9% 54.3%
3808909 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.54 31.0 3.66e-01 96.7% 90.9%
3731471 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.54 35.0 3.38e-01 100.0% 55.5%
5020049 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.54 33.0 3.29e-01 97.8% 57.9%
3613889 878.1.1.0 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 0.54 42.0 4.09e-01 98.9% 76.0%
4962969 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.53 36.0 3.29e-01 100.0% 52.5%
4468793 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.53 35.0 3.80e-01 100.0% 82.7%
353436 304.4.1.8 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › rhaM 0.52 33.0 3.13e-01 98.9% 52.8%
5052115 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 32.0 3.27e-01 97.8% 61.1%
434772 3213.1.1.1 ↗ a+b two layers › hypothetical protein TTHB210 › hypothetical protein TTHB210 › hypothetical protein TTHB210 › TTHB210-like 0.52 36.0 3.39e-01 100.0% 56.9%
3724566 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 32.0 3.26e-01 100.0% 60.0%
3613752 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 40.0 2.95e-01 85.9% 58.1%
4928084 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.52 33.0 3.27e-01 100.0% 60.0%
3944435 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 29.0 3.12e-01 98.9% 65.3%