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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00285
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00285
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 371-682
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00905.28 best | Transpeptidase | 63.6 | 2.50e-17 | 81.7% | 81.3% |
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2c5wB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.94 | 93.0 | 8.45e-01 | 100.0% | 83.9% |
| 3zg9B02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.93 | 84.0 | 7.97e-01 | 93.3% | 81.2% |
| 2olvA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.91 | 82.0 | 8.14e-01 | 100.0% | 88.9% |
| 2bg1A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.88 | 79.0 | 7.93e-01 | 96.5% | 92.0% |
| 3udfA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.87 | 80.0 | 7.41e-01 | 95.8% | 78.2% |
| 5cxwA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.87 | 84.0 | 7.81e-01 | 99.4% | 83.8% |
| 3fwlA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.87 | 85.0 | 7.64e-01 | 100.0% | 79.3% |
| 4iedA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.84 | 61.0 | 6.91e-01 | 93.9% | 94.2% |
| 5df7A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.84 | 77.0 | 7.44e-01 | 94.6% | 91.8% |
| 7rd0A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.83 | 75.0 | 7.42e-01 | 92.0% | 95.3% |
| 4u3tB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.83 | 75.0 | 7.48e-01 | 94.6% | 91.1% |
| 3vskA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.83 | 75.0 | 7.07e-01 | 92.6% | 92.2% |
| 5troA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.83 | 74.0 | 7.32e-01 | 91.7% | 94.4% |
| 6g9sA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.82 | 75.0 | 7.24e-01 | 92.6% | 96.2% |
| 6pl6B01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.82 | 74.0 | 7.05e-01 | 92.6% | 91.0% |
| 3lo7A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.81 | 68.0 | 7.11e-01 | 92.6% | 92.7% |
| 4mnrA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.81 | 74.0 | 7.43e-01 | 93.9% | 94.6% |
| 1mwsA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.80 | 73.0 | 7.16e-01 | 93.6% | 95.2% |
| 5dvyA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.80 | 73.0 | 7.25e-01 | 92.9% | 96.5% |
| 7rlrA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.80 | 60.0 | 6.77e-01 | 92.3% | 97.5% |
| 2wadA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.78 | 71.0 | 6.93e-01 | 93.9% | 92.3% |
| 1k25B02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.76 | 63.0 | 6.46e-01 | 93.6% | 88.4% |
| 4ewfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.75 | 58.0 | 6.28e-01 | 93.3% | 91.4% |
| 3mfdA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.74 | 55.0 | 6.32e-01 | 92.9% | 99.6% |
| 2n54B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.70 | 12.0 | 3.08e-01 | 86.9% | 71.2% |
| 7yh1A01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.70 | 25.0 | 4.06e-01 | 92.0% | 85.1% |
| 6kghA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.70 | 30.0 | 4.33e-01 | 99.0% | 83.1% |
| 1skoB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.68 | 25.0 | 4.07e-01 | 93.3% | 87.9% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.67 | 17.0 | 3.83e-01 | 86.2% | 100.0% |
| 6kjcA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.65 | 59.0 | 5.28e-01 | 93.6% | 92.7% |
| 1yprA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.65 | 25.0 | 4.07e-01 | 93.6% | 90.4% |
| 1ci9A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.63 | 56.0 | 5.23e-01 | 91.7% | 94.4% |
| 4qwoB00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.62 | 26.0 | 3.91e-01 | 93.6% | 89.4% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.61 | 53.0 | 5.48e-01 | 92.9% | 94.4% |
| 3q63F00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 21.0 | 3.15e-01 | 84.3% | 79.9% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 23.0 | 3.45e-01 | 91.3% | 95.2% |
| 2jpiA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.53 | 15.0 | 2.74e-01 | 90.7% | 76.0% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 15.0 | 3.01e-01 | 72.8% | 100.0% |
| 1vr8A00 | 3.40.1000.20 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like | 0.52 | 24.0 | 3.48e-01 | 91.3% | 94.8% |
| 1tu1A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.52 | 23.0 | 3.37e-01 | 90.4% | 88.9% |
| 7pjcA02 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.51 | 18.0 | 2.78e-01 | 84.6% | 72.9% |
| 5nmxB02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 16.0 | 2.90e-01 | 81.4% | 90.3% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588501 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.95 | 94.0 | 8.39e-01 | 100.0% | 79.7% |
| 4599893 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.92 | 56.0 | 6.00e-01 | 100.0% | 68.6% |
| 4061397 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.90 | 51.0 | 5.92e-01 | 92.6% | 74.1% |
| 3165643 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.88 | 86.0 | 7.34e-01 | 100.0% | 83.0% |
| 3838610 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.88 | 53.0 | 5.86e-01 | 96.2% | 72.3% |
| 3987938 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.86 | 56.0 | 5.90e-01 | 99.0% | 71.8% |
| 3951241 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.86 | 84.0 | 7.57e-01 | 99.7% | 78.8% |
| 4032151 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.86 | 80.0 | 7.56e-01 | 94.6% | 92.1% |
| 3951119 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.86 | 78.0 | 7.42e-01 | 92.9% | 93.5% |
| 3163688 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.85 | 78.0 | 7.20e-01 | 93.3% | 93.3% |
| 4495366 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.85 | 77.0 | 7.14e-01 | 92.9% | 92.8% |
| 1853146 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.85 | 77.0 | 7.30e-01 | 93.6% | 92.4% |
| 3965638 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.84 | 77.0 | 6.70e-01 | 94.2% | 70.5% |
| 3966462 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.84 | 77.0 | 7.45e-01 | 94.6% | 91.3% |
| 3283393 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.84 | 73.0 | 6.72e-01 | 92.6% | 72.6% |
| 3951192 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.84 | 81.0 | 6.79e-01 | 99.0% | 71.4% |
| 3951983 | 3702.1.1.4 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Transpeptidase | 0.84 | 81.0 | 6.79e-01 | 99.0% | 71.7% |
| 3950741 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.84 | 73.0 | 6.67e-01 | 92.9% | 71.5% |
| None | — | 0.83 | 77.0 | 6.72e-01 | 94.6% | 71.3% | |
| 4681169 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.83 | 74.0 | 6.58e-01 | 91.3% | 70.5% |
| 4179241 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.83 | 61.0 | 4.88e-01 | 100.0% | 42.6% |
| 4652220 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.83 | 76.0 | 7.36e-01 | 93.9% | 92.4% |
| 3839475 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.83 | 76.0 | 7.16e-01 | 93.6% | 94.7% |
| 3166061 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.83 | 54.0 | 5.50e-01 | 100.0% | 66.9% |
| 3589951 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.83 | 75.0 | 6.93e-01 | 93.6% | 92.7% |
| 3589046 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.83 | 76.0 | 7.37e-01 | 93.6% | 95.2% |
| 3974035 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.82 | 56.0 | 5.94e-01 | 100.0% | 76.1% |
| None | — | 0.82 | 59.0 | 6.17e-01 | 100.0% | 78.6% | |
| 4459942 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.82 | 75.0 | 7.22e-01 | 93.3% | 94.1% |
| 3839186 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.82 | 78.0 | 7.45e-01 | 98.7% | 94.1% |
| None | — | 0.81 | 54.0 | 5.79e-01 | 100.0% | 75.6% | |
| 4485300 | 223.3.1.14 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase, PF29195 | 0.81 | 57.0 | 5.96e-01 | 100.0% | 76.8% |
| 5053718 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.81 | 74.0 | 7.19e-01 | 92.9% | 92.8% |
| 4041233 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.81 | 74.0 | 7.21e-01 | 93.6% | 92.2% |
| 3573602 | 223.3.1.15 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase, PF30382, PF30384 | 0.81 | 79.0 | 6.96e-01 | 100.0% | 74.0% |
| 4436836 | 223.3.1.14 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase, PF29195 | 0.81 | 55.0 | 5.22e-01 | 100.0% | 60.3% |
| 4077515 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.81 | 74.0 | 7.02e-01 | 94.6% | 92.8% |
| 4008460 | 223.3.1.18 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › PF30382 | 0.80 | 73.0 | 6.76e-01 | 100.0% | 77.6% |
| 3981283 | 223.3.1.19 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › PF30382, PF30384 | 0.80 | 73.0 | 6.50e-01 | 100.0% | 71.0% |
| 3973805 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.79 | 55.0 | 5.65e-01 | 100.0% | 72.1% |
| 3956080 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.79 | 54.0 | 5.81e-01 | 100.0% | 78.2% |
| 3286678 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.79 | 54.0 | 5.74e-01 | 100.0% | 76.8% |
| 4380871 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.78 | 51.0 | 5.27e-01 | 94.6% | 68.3% |
| 5001318 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.77 | 25.0 | 4.41e-01 | 93.3% | 85.5% |
| 4173946 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.77 | 58.0 | 5.84e-01 | 100.0% | 76.8% |
| 4458271 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.77 | 58.0 | 5.83e-01 | 100.0% | 76.8% |
| 4177374 | 223.3.1.14 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase, PF29195 | 0.70 | 59.0 | 5.75e-01 | 100.0% | 80.0% |
| 3999005 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.69 | 14.0 | 3.46e-01 | 85.9% | 86.2% |
| 3783266 | 223.2.1.33 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 | 0.68 | 26.0 | 4.13e-01 | 93.3% | 87.2% |
| 3733036 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.66 | 59.0 | 5.55e-01 | 93.3% | 92.8% |
| 3209295 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.63 | 27.0 | 4.07e-01 | 93.6% | 90.4% |
| 4261091 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 25.0 | 3.75e-01 | 92.9% | 87.6% |
| 3711721 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.60 | 28.0 | 4.03e-01 | 93.6% | 90.7% |
| 3497127 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 27.0 | 3.97e-01 | 93.6% | 91.7% |
| 3663259 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.52 | 25.0 | 3.62e-01 | 89.7% | 99.3% |
| 4987915 | 331.5.1.1 ↗ | a+b two layers › TBP-like › TT1751-like › TT1751-like › DUF302 | 0.52 | 20.0 | 3.06e-01 | 85.6% | 81.6% |
D2
medium
residues 69-103_309-357
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3udfA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.80 | 58.0 | 3.68e-01 | 85.7% | 17.0% |
| 2oluA01 | 3.90.1310.20 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.65 | 50.0 | 4.72e-01 | 81.0% | 77.8% |
| 3ue3A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.62 | 45.0 | 4.33e-01 | 76.2% | 94.8% |
| 1vqqA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.61 | 44.0 | 3.90e-01 | 76.2% | 90.0% |
| 5kshB01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.60 | 43.0 | 4.12e-01 | 77.4% | 92.1% |
| 1qmeA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.59 | 43.0 | 4.12e-01 | 76.2% | 83.3% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.58 | 42.0 | 3.47e-01 | 76.2% | 86.5% |
| 6kguA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.57 | 43.0 | 4.32e-01 | 81.0% | 97.7% |
| 4jbfB01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.55 | 39.0 | 3.93e-01 | 75.0% | 80.2% |
| 3vskA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.54 | 39.0 | 3.44e-01 | 77.4% | 100.0% |
| 7rd0A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.50 | 36.0 | 3.05e-01 | 76.2% | 98.1% |
| 3mwmA02 | 3.30.1490.190 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain | 0.50 | 27.0 | 3.33e-01 | 75.0% | 84.6% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4179241 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.70 | 65.0 | 3.88e-01 | 98.8% | 50.5% |
| 4373826 | 3702.1.1.1 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › PBP_dimer | 0.63 | 46.0 | 3.72e-01 | 77.4% | 72.5% |
| 3839898 | 3702.1.1.1 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › PBP_dimer | 0.62 | 46.0 | 4.01e-01 | 78.6% | 88.5% |
| 3386439 | 3702.1.1.1 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › PBP_dimer | 0.62 | 45.0 | 3.88e-01 | 77.4% | 77.8% |
| 3272511 | 223.2.1.8 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin | 0.62 | 42.0 | 3.59e-01 | 70.2% | 100.0% |
| 3987242 | 3702.1.1.1 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › PBP_dimer | 0.57 | 42.0 | 3.51e-01 | 77.4% | 75.2% |
| 3516837 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.57 | 39.0 | 2.92e-01 | 71.4% | 98.6% |
| 4249669 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 37.0 | 3.62e-01 | 76.2% | 98.9% |
| 3410509 | 221.1.1.60 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_5 | 0.51 | 38.0 | 3.85e-01 | 83.3% | 97.6% |
| 4013383 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.51 | 39.0 | 3.60e-01 | 84.5% | 84.5% |
| 5061065 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.50 | 30.0 | 3.56e-01 | 73.8% | 90.9% |
| 5034646 | 4.6.1.4 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › DUF5749 | 0.50 | 33.0 | 3.38e-01 | 84.5% | 70.0% |
D3
medium
residues 104-123_201-308
Domain cluster:
rep: SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00136__D312-335_414-536
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00912.29 best | Transgly | 63.9 | 1.80e-17 | 75.8% | 44.9% |
D4
medium
residues 124-200
Domain cluster:
rep: SRR1747018_scaffold_2_1202_curated_prodigal-single.1__X__X__00136__D336-413
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00912.29 best | Transgly | 41.4 | 1.50e-10 | 100.0% | 37.1% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hzsA00 | 1.10.3810.10 | Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like | 0.73 | 59.0 | 4.22e-01 | 100.0% | 31.6% |
| 2vqgA00 | 1.10.10.1280 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Alpha-helical porin B/porin C | 0.72 | 43.0 | 4.41e-01 | 97.4% | 61.8% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.65 | 42.0 | 3.72e-01 | 100.0% | 45.9% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.62 | 47.0 | 4.54e-01 | 84.4% | 94.4% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.59 | 42.0 | 4.05e-01 | 90.9% | 65.9% |
| 3lmfA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 37.0 | 3.30e-01 | 94.8% | 45.0% |
| 3q5dA02 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.59 | 38.0 | 3.59e-01 | 100.0% | 52.6% |
| 2dodA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.59 | 35.0 | 3.48e-01 | 92.2% | 56.1% |
| 1evsA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 43.0 | 3.44e-01 | 79.2% | 55.2% |
| 1lq7A00 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.58 | 34.0 | 3.62e-01 | 84.4% | 65.7% |
| 5cofA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.56 | 49.0 | 3.85e-01 | 100.0% | 74.4% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.55 | 38.0 | 3.80e-01 | 90.9% | 69.1% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.55 | 40.0 | 3.47e-01 | 79.2% | 100.0% |
| 2o8iA00 | 1.10.3330.10 | Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | 0.55 | 47.0 | 3.80e-01 | 97.4% | 91.6% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.54 | 41.0 | 3.95e-01 | 94.8% | 70.3% |
| 1euvA01 | 1.10.418.20 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › | 0.53 | 42.0 | 3.87e-01 | 88.3% | 83.8% |
| 2jx0A00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.52 | 44.0 | 3.78e-01 | 98.7% | 88.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3987240 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.88 | 74.0 | 5.00e-01 | 100.0% | 27.1% |
| 4034309 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.88 | 72.0 | 4.76e-01 | 100.0% | 24.4% |
| 4660292 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.86 | 79.0 | 5.28e-01 | 100.0% | 28.7% |
| 4108282 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.84 | 71.0 | 4.96e-01 | 100.0% | 30.2% |
| 3969665 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.79 | 73.0 | 4.89e-01 | 100.0% | 31.5% |
| 3846608 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 44.0 | 2.94e-01 | 98.7% | 19.7% |
| 3806393 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 34.0 | 3.64e-01 | 96.1% | 69.2% |
| 3179924 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.56 | 33.0 | 3.46e-01 | 96.1% | 61.4% |
| 3169408 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.56 | 35.0 | 3.65e-01 | 90.9% | 68.6% |
| 3737949 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.56 | 34.0 | 3.73e-01 | 96.1% | 73.8% |
| 3954971 | 5041.1.1.36 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › UPF0014 | 0.54 | 38.0 | 3.69e-01 | 96.1% | 63.3% |
| 3296128 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 32.0 | 3.32e-01 | 77.9% | 64.3% |
| 3173720 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.52 | 41.0 | 2.81e-01 | 87.0% | 51.7% |
| 3661801 | 5027.1.1.3 ↗ | extended segments › Preprotein translocase SecE subunit › Preprotein translocase SecE subunit › Preprotein translocase SecE subunit › NEMP | 0.52 | 37.0 | 3.82e-01 | 94.8% | 78.7% |
| 4876177 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 40.0 | 4.08e-01 | 96.1% | 83.3% |