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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00288
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00288
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-15_161-242
Domain cluster:
rep: js4906-25-2-S21_Prophage_curated_prodigal-single.1__X__X__00151__D9-19_222-292
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3u3lC00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.57 | 47.0 | 3.50e-01 | 90.1% | 69.6% |
| 3so6A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 40.0 | 3.60e-01 | 75.8% | 89.1% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 41.0 | 3.73e-01 | 76.9% | 80.6% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.54 | 37.0 | 3.36e-01 | 73.6% | 84.6% |
| 2uuvB01 | 3.40.462.40 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix | 0.53 | 38.0 | 2.76e-01 | 74.7% | 70.0% |
| 3go5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 36.0 | 3.82e-01 | 81.3% | 82.3% |
| 4r70B01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 38.0 | 3.04e-01 | 80.2% | 67.0% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 35.0 | 3.13e-01 | 100.0% | 52.4% |
| 1bowA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.50 | 44.0 | 3.83e-01 | 98.9% | 95.8% |
| 5llyA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 37.0 | 3.03e-01 | 79.1% | 80.0% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945985 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.75 | 68.0 | 5.59e-01 | 100.0% | 98.1% |
| 3604095 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.71 | 65.0 | 6.17e-01 | 100.0% | 96.2% |
| 3250183 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.60 | 35.0 | 3.98e-01 | 98.9% | 75.7% |
| 1954221 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.60 | 46.0 | 4.95e-01 | 86.8% | 100.0% |
| 3597127 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.59 | 54.0 | 4.27e-01 | 100.0% | 98.3% |
| 3942852 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.58 | 52.0 | 4.16e-01 | 98.9% | 99.4% |
| 5002938 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.58 | 48.0 | 3.70e-01 | 90.1% | 75.0% |
| 4988735 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.57 | 48.0 | 3.67e-01 | 90.1% | 75.9% |
| 5048695 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.57 | 47.0 | 3.62e-01 | 90.1% | 77.1% |
| 5013246 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.57 | 48.0 | 3.67e-01 | 90.1% | 75.0% |
| 5020424 | 866.1.1.0 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like | 0.56 | 46.0 | 3.54e-01 | 90.1% | 73.8% |
| 4988650 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.55 | 46.0 | 3.58e-01 | 90.1% | 76.9% |
| 5050255 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.55 | 46.0 | 3.49e-01 | 90.1% | 77.1% |
| 4949976 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.55 | 45.0 | 3.50e-01 | 90.1% | 75.5% |
| 5007114 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.55 | 45.0 | 3.50e-01 | 90.1% | 74.5% |
| 4008870 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 38.0 | 2.50e-01 | 98.9% | 17.2% |
| 5050254 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.54 | 44.0 | 3.40e-01 | 90.1% | 77.6% |
| 3982540 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.54 | 38.0 | 2.80e-01 | 98.9% | 28.5% |
| 3730739 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.54 | 38.0 | 3.42e-01 | 75.8% | 87.2% |
| 4997186 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.53 | 46.0 | 4.01e-01 | 97.8% | 99.3% |
| 4999586 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.52 | 46.0 | 3.86e-01 | 98.9% | 99.4% |
| 4927772 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.52 | 42.0 | 3.33e-01 | 90.1% | 77.4% |
| 4509873 | 814.1.1.2 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › Chor_lyase | 0.52 | 44.0 | 3.53e-01 | 100.0% | 48.6% |
| 5030398 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.51 | 45.0 | 4.13e-01 | 98.9% | 100.0% |
| 4938613 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.51 | 41.0 | 3.26e-01 | 90.1% | 79.5% |
| 4308192 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.51 | 43.0 | 3.73e-01 | 98.9% | 70.3% |
D2
high
residues 18-152
Domain cluster:
rep: js4906-26-2_S25_scaffold_55_prodigal-single.1__X__X__00226__D33-139
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.77 | 35.0 | 4.38e-01 | 88.1% | 69.9% |
| 1cxzB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.73 | 30.0 | 3.83e-01 | 100.0% | 62.8% |
| 2ke4A00 | 6.10.140.470 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 31.0 | 3.58e-01 | 100.0% | 54.1% |
| 3gnlB02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 26.0 | 3.75e-01 | 87.4% | 73.5% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.67 | 33.0 | 3.99e-01 | 92.6% | 70.0% |
| 1txuA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.67 | 40.0 | 4.67e-01 | 91.1% | 84.0% |
| 7sgrA02 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.64 | 50.0 | 3.84e-01 | 82.2% | 43.2% |
| 7wivA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 50.0 | 3.89e-01 | 91.1% | 85.7% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.59 | 30.0 | 3.63e-01 | 73.3% | 75.3% |
| 7p3rA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.59 | 46.0 | 3.51e-01 | 83.7% | 82.5% |
| 4adzA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.59 | 37.0 | 4.30e-01 | 72.6% | 93.3% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.58 | 37.0 | 4.35e-01 | 73.3% | 98.8% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 41.0 | 4.37e-01 | 78.5% | 83.9% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 31.0 | 3.88e-01 | 82.2% | 91.9% |
| 8iprA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.57 | 48.0 | 3.68e-01 | 90.4% | 45.3% |
| 2dw4A03 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.57 | 32.0 | 3.71e-01 | 85.9% | 74.3% |
| 2dq0A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.57 | 31.0 | 3.51e-01 | 88.9% | 67.3% |
| 3vkgA12 | 1.10.287.2610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 33.0 | 2.83e-01 | 88.1% | 36.7% |
| 8ipqB01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.56 | 50.0 | 3.93e-01 | 97.8% | 82.8% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.56 | 33.0 | 3.76e-01 | 75.6% | 78.2% |
| 7powA01 | 1.20.120.1760 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain | 0.56 | 33.0 | 2.91e-01 | 94.1% | 38.9% |
| 2gl2B00 | 1.10.287.1700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 33.0 | 3.66e-01 | 93.3% | 73.4% |
| 5zw7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 37.0 | 3.62e-01 | 73.3% | 61.2% |
| 1dowA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.55 | 38.0 | 3.38e-01 | 71.9% | 57.6% |
| 4hkaA01 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 38.0 | 2.99e-01 | 71.1% | 81.3% |
| 1ldjA02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.55 | 37.0 | 3.85e-01 | 80.0% | 74.0% |
| 4mrsA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.54 | 45.0 | 3.40e-01 | 90.4% | 45.9% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.54 | 37.0 | 4.22e-01 | 93.3% | 94.1% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.54 | 34.0 | 3.19e-01 | 88.9% | 52.8% |
| 1i36A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 26.0 | 3.01e-01 | 77.8% | 62.6% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 33.0 | 3.81e-01 | 76.3% | 90.2% |
| 2b1eA04 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.53 | 36.0 | 3.75e-01 | 92.6% | 74.8% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 38.0 | 4.00e-01 | 80.0% | 84.2% |
| 7zdtD01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.53 | 45.0 | 3.48e-01 | 95.6% | 45.7% |
| 1y1uA01 | 1.20.1050.20 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain | 0.52 | 38.0 | 3.38e-01 | 81.5% | 51.8% |
| 3nbxX03 | 1.20.58.1510 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 37.0 | 4.17e-01 | 97.0% | 99.0% |
| 1yc9A01 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.52 | 40.0 | 3.08e-01 | 83.7% | 97.9% |
| 6xkyA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.51 | 40.0 | 3.53e-01 | 80.7% | 68.4% |
| 1dn1B00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 39.0 | 3.33e-01 | 79.3% | 65.3% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 39.0 | 3.42e-01 | 81.5% | 82.9% |
| 3q18A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 39.0 | 4.19e-01 | 79.3% | 95.7% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.51 | 35.0 | 3.52e-01 | 79.3% | 68.8% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5007086 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.75 | 48.0 | 5.28e-01 | 80.0% | 79.1% |
| 5070059 | 3834.1.1.25 ↗ | alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 | 0.70 | 51.0 | 4.10e-01 | 85.9% | 40.8% |
| 5056869 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.62 | 34.0 | 3.09e-01 | 88.9% | 41.7% |
| 3694634 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.62 | 48.0 | 3.59e-01 | 81.5% | 43.5% |
| 3207569 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.62 | 48.0 | 4.13e-01 | 80.7% | 97.0% |
| 3560229 | 3291.1.1.230 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › TBCA_PH | 0.60 | 34.0 | 3.38e-01 | 88.1% | 54.3% |
| 5041482 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.59 | 31.0 | 3.69e-01 | 91.1% | 72.6% |
| 4045652 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.58 | 50.0 | 3.88e-01 | 97.8% | 75.4% |
| 4622994 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.58 | 50.0 | 3.87e-01 | 97.8% | 75.1% |
| 4015065 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.57 | 49.0 | 3.77e-01 | 96.3% | 80.9% |
| 3593427 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.57 | 30.0 | 2.93e-01 | 100.0% | 45.8% |
| 4993051 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.57 | 42.0 | 2.73e-01 | 77.0% | 51.2% |
| 3849009 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 45.0 | 3.69e-01 | 85.9% | 96.5% |
| 3180975 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.56 | 46.0 | 4.15e-01 | 88.9% | 76.3% |
| 3743077 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 38.0 | 3.99e-01 | 80.7% | 75.2% |
| 3817615 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 35.0 | 3.98e-01 | 73.3% | 81.9% |
| 3837777 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 35.0 | 3.96e-01 | 74.8% | 81.9% |
| 3171529 | 5025.1.1.7 ↗ | extended segments › PetL subunit of the cytochrome b6f complex › PetL subunit of the cytochrome b6f complex › PetL subunit of the cytochrome b6f complex › Erv26 | 0.55 | 37.0 | 3.89e-01 | 76.3% | 74.4% |
| 5083949 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.55 | 33.0 | 3.45e-01 | 88.1% | 63.8% |
| 4283760 | 1203.1.2.7 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › GNVR | 0.54 | 38.0 | 3.76e-01 | 88.1% | 67.9% |
| 3657504 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 34.0 | 3.46e-01 | 88.1% | 63.7% |
| 4010267 | 192.8.1.131 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › GNVR | 0.54 | 37.0 | 3.77e-01 | 90.4% | 71.5% |
| 3358116 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.54 | 48.0 | 3.72e-01 | 98.5% | 48.9% |
| 3467252 | 109.4.1.359 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo70_C | 0.54 | 38.0 | 2.85e-01 | 90.4% | 27.9% |
| 3588761 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.54 | 47.0 | 3.63e-01 | 97.8% | 77.8% |
| 3251839 | 601.1.2.4 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 | 0.54 | 37.0 | 3.71e-01 | 78.5% | 69.6% |
| 3907213 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 34.0 | 3.88e-01 | 75.6% | 86.0% |
| 3990679 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.53 | 44.0 | 3.68e-01 | 91.1% | 65.6% |
| 3456475 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.53 | 45.0 | 3.56e-01 | 95.6% | 89.7% |
| 3166260 | 1.1.7.123 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25885 | 0.53 | 32.0 | 3.35e-01 | 88.9% | 64.6% |
| 3233240 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.52 | 41.0 | 3.29e-01 | 83.7% | 80.4% |
| 5036054 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.52 | 36.0 | 2.51e-01 | 71.1% | 21.1% |
| 3392286 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.52 | 38.0 | 4.25e-01 | 75.6% | 92.7% |
| 3432720 | 604.1.1.118 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › GOSR1_N | 0.52 | 37.0 | 3.65e-01 | 81.5% | 68.3% |
| 3713159 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.51 | 34.0 | 3.61e-01 | 76.3% | 75.0% |
| 3601705 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.51 | 36.0 | 2.77e-01 | 72.6% | 57.9% |
| 3904356 | 3755.3.1.9 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › SH3BP5 | 0.51 | 43.0 | 3.70e-01 | 88.1% | 84.4% |
| 5079419 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.51 | 43.0 | 3.77e-01 | 94.1% | 97.7% |
| 3974536 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 40.0 | 2.86e-01 | 83.7% | 37.6% |
| 3946576 | 5086.1.1.66 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR | 0.51 | 36.0 | 3.66e-01 | 88.9% | 73.3% |
| 4024594 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.50 | 44.0 | 3.33e-01 | 98.5% | 70.9% |
D3
high
residues 254-279_340-513
Domain cluster:
rep: IMGVR_UViG_3300029775_000002-3300029775-Ga0134843_100044344__D173-355
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2o8bB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.59 | 51.0 | 5.26e-01 | 96.5% | 96.2% |
| 3obwA03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.58 | 27.0 | 3.76e-01 | 79.0% | 86.3% |
| 3i8oA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.58 | 37.0 | 4.50e-01 | 94.5% | 99.2% |
| 2qxlB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 38.0 | 4.55e-01 | 85.5% | 100.0% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 34.0 | 4.14e-01 | 93.5% | 90.2% |
| 3obyA03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.57 | 26.0 | 3.64e-01 | 79.0% | 86.9% |
| 1tezA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 34.0 | 4.14e-01 | 94.5% | 97.7% |
| 4h0oA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 36.0 | 3.87e-01 | 71.5% | 99.4% |
| 1oi2A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.50 | 33.0 | 3.58e-01 | 83.5% | 76.9% |
| 7r0kB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 40.0 | 3.75e-01 | 84.5% | 80.2% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3587862 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.80 | 65.0 | 6.52e-01 | 83.0% | 97.5% |
| 5005094 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.80 | 65.0 | 6.59e-01 | 83.0% | 95.4% |
| 4007799 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.79 | 65.0 | 6.70e-01 | 84.0% | 96.3% |
| 4945986 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.79 | 65.0 | 6.32e-01 | 84.0% | 98.6% |
| 4173456 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.79 | 63.0 | 6.40e-01 | 81.5% | 98.5% |
| 4941600 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.79 | 60.0 | 6.77e-01 | 80.0% | 98.1% |
| 4979486 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.78 | 64.0 | 6.86e-01 | 84.0% | 96.6% |
| 4941496 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.78 | 61.0 | 6.12e-01 | 81.0% | 87.3% |
| 5017725 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.78 | 63.0 | 6.44e-01 | 83.5% | 95.4% |
| 3955489 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.77 | 61.0 | 6.05e-01 | 82.5% | 96.7% |
| 4977784 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.76 | 68.0 | 6.44e-01 | 94.5% | 97.4% |
| 4934385 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.74 | 60.0 | 6.21e-01 | 83.5% | 96.3% |
| 4979574 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.74 | 59.0 | 6.39e-01 | 84.0% | 95.9% |
| 5072432 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.74 | 60.0 | 6.24e-01 | 83.0% | 98.4% |
| 4979556 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 59.0 | 5.80e-01 | 83.5% | 92.1% |
| 5004517 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 59.0 | 5.86e-01 | 84.0% | 92.4% |
| 5025801 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 58.0 | 6.08e-01 | 82.5% | 98.9% |
| 4979039 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 59.0 | 5.85e-01 | 84.0% | 95.7% |
| 5005258 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 59.0 | 5.88e-01 | 84.0% | 94.1% |
| 4933788 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.73 | 60.0 | 5.97e-01 | 86.5% | 95.7% |
| 4933539 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 65.0 | 6.31e-01 | 93.5% | 97.2% |
| 4972401 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.72 | 67.0 | 6.51e-01 | 96.0% | 94.4% |
| 4941648 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 58.0 | 5.94e-01 | 84.0% | 94.9% |
| 4961801 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 58.0 | 5.77e-01 | 83.0% | 94.1% |
| 5003640 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.72 | 60.0 | 6.06e-01 | 87.0% | 97.5% |
| 4931546 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.71 | 58.0 | 6.04e-01 | 84.0% | 96.8% |
| 4978165 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.71 | 58.0 | 5.82e-01 | 84.0% | 94.0% |
| 4962880 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.71 | 65.0 | 6.23e-01 | 96.0% | 94.2% |
| 4934194 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.71 | 63.0 | 6.33e-01 | 92.5% | 99.0% |
| 4992438 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.70 | 55.0 | 6.08e-01 | 86.0% | 98.8% |
| 4995973 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.69 | 51.0 | 5.22e-01 | 84.5% | 78.4% |
| 5051266 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.68 | 63.0 | 6.05e-01 | 96.5% | 96.9% |
| 5075524 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.68 | 57.0 | 5.84e-01 | 89.0% | 100.0% |
| 4999482 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.67 | 63.0 | 6.23e-01 | 98.0% | 97.6% |
| 4529580 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.67 | 51.0 | 5.66e-01 | 84.0% | 98.1% |
| 4928066 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 54.0 | 5.76e-01 | 84.0% | 97.2% |
| 4996735 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.66 | 50.0 | 5.29e-01 | 96.5% | 86.1% |
| 4999337 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.63 | 45.0 | 5.16e-01 | 85.5% | 94.2% |
| 3956669 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.60 | 50.0 | 5.25e-01 | 99.0% | 95.0% |
| 3321285 | 2005.1.1.41 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C | 0.55 | 43.0 | 4.43e-01 | 98.5% | 85.6% |
| 4303957 | 2006.1.6.15 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 | 0.53 | 30.0 | 3.38e-01 | 83.5% | 69.7% |
| 3260070 | 2008.1.1.7 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 | 0.52 | 32.0 | 3.33e-01 | 86.0% | 62.1% |
| 3463976 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 32.0 | 3.96e-01 | 95.5% | 100.0% |
D4
medium
residues 280-339
Domain cluster:
rep: js4906-26-2_S25_scaffold_55_prodigal-single.1__X__X__00226__D302-354
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g7xB00 | 3.30.1150.10 | Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › | 0.71 | 64.0 | 5.33e-01 | 100.0% | 88.2% |
| 3terA00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 63.0 | 4.90e-01 | 100.0% | 51.3% |
| 4hfvA02 | 6.10.280.170 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system | 0.66 | 55.0 | 5.21e-01 | 90.0% | 80.3% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.65 | 43.0 | 3.93e-01 | 100.0% | 50.0% |
| 4n21E00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 59.0 | 4.62e-01 | 100.0% | 71.9% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.64 | 44.0 | 3.70e-01 | 86.7% | 45.3% |
| 1j3wC00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.63 | 54.0 | 4.14e-01 | 95.0% | 94.0% |
| 2oyhA00 | 1.20.5.50 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.63 | 53.0 | 5.26e-01 | 100.0% | 87.5% |
| 2fh5A01 | 3.30.450.60 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.62 | 52.0 | 4.19e-01 | 95.0% | 46.7% |
| 2ra1A01 | 1.20.58.790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 54.0 | 4.55e-01 | 98.3% | 61.2% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 48.0 | 4.55e-01 | 100.0% | 73.3% |
| 5b7cA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 50.0 | 4.14e-01 | 100.0% | 52.3% |
| 1yfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.58 | 51.0 | 3.31e-01 | 100.0% | 22.3% |
| 2kseA00 | 1.20.5.1040 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. | 0.57 | 43.0 | 4.02e-01 | 100.0% | 64.9% |
| 4g2aA02 | 1.20.58.1690 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 45.0 | 4.07e-01 | 91.7% | 74.7% |
| 7lvlA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 45.0 | 2.92e-01 | 100.0% | 21.9% |
| 4n4pD00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 45.0 | 2.92e-01 | 100.0% | 21.5% |
| 2mjfB00 | 1.20.1440.260 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.51 | 42.0 | 3.71e-01 | 95.0% | 61.1% |
| 3d0cB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 41.0 | 2.67e-01 | 91.7% | 22.7% |
| 3na8A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 43.0 | 2.80e-01 | 100.0% | 21.0% |
| 3cprA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 43.0 | 2.76e-01 | 100.0% | 20.9% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4626208 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.75 | 66.0 | 4.83e-01 | 100.0% | 38.6% |
| 3724169 | 4992.1.1.10 ↗ | extended segments › RelB-like › RelB-like › RelB-like › DUF6594 | 0.73 | 69.0 | 5.87e-01 | 100.0% | 74.4% |
| 3207999 | 3660.1.1.4 ↗ | alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › DUF7785 | 0.72 | 68.0 | 5.66e-01 | 100.0% | 67.4% |
| 3689543 | 3922.1.1.227 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DUF6594 | 0.71 | 67.0 | 5.84e-01 | 100.0% | 78.8% |
| 3601647 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 66.0 | 3.71e-01 | 100.0% | 12.0% |
| 4162117 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 60.0 | 4.30e-01 | 100.0% | 35.0% |
| 5081618 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.69 | 66.0 | 5.03e-01 | 100.0% | 70.8% |
| 4789520 | 3719.1.1.0 ↗ | alpha bundles › Imelysin peptidase-like › Imelysin peptidase-like › Imelysin peptidase-like | 0.69 | 55.0 | 5.49e-01 | 96.7% | 84.1% |
| 3921008 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.69 | 65.0 | 4.62e-01 | 100.0% | 50.3% |
| 4648944 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.69 | 59.0 | 3.96e-01 | 100.0% | 26.0% |
| 3883044 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.67 | 60.0 | 3.80e-01 | 100.0% | 20.3% |
| 3371246 | 5050.1.1.2 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 | 0.66 | 58.0 | 3.38e-01 | 100.0% | 34.5% |
| 5059668 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 53.0 | 4.41e-01 | 100.0% | 50.5% |
| 4962637 | 604.1.1.269 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF5790 | 0.66 | 60.0 | 4.47e-01 | 100.0% | 53.8% |
| 3967231 | 5051.1.1.9 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur | 0.64 | 55.0 | 3.30e-01 | 100.0% | 46.9% |
| 3365228 | 5050.1.1.2 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 | 0.63 | 56.0 | 3.56e-01 | 100.0% | 45.3% |
| 3245304 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.63 | 58.0 | 3.49e-01 | 100.0% | 16.3% |
| 3727303 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.63 | 55.0 | 3.30e-01 | 100.0% | 19.8% |
| 3674375 | 5050.1.1.2 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 | 0.63 | 58.0 | 3.30e-01 | 100.0% | 38.4% |
| 3990724 | 3447.1.1.5 ↗ | alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Steroid_dh | 0.61 | 54.0 | 3.76e-01 | 100.0% | 29.5% |
| 3294780 | 3755.3.1.375 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF4079 | 0.61 | 56.0 | 4.11e-01 | 100.0% | 40.0% |
| 4608056 | 268.2.1.1 ↗ | a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr | 0.61 | 52.0 | 3.33e-01 | 95.0% | 74.7% |
| 4274916 | 5000.4.1.1 ↗ | alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N | 0.61 | 53.0 | 3.36e-01 | 100.0% | 19.7% |
| 3972174 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.60 | 52.0 | 3.79e-01 | 100.0% | 86.9% |
| 3696446 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.60 | 54.0 | 3.74e-01 | 100.0% | 85.1% |
| 4037914 | 3447.1.1.5 ↗ | alpha bundles › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Isoprenylcysteine carboxyl methyltransferase (ICMT) › Steroid_dh | 0.59 | 52.0 | 3.31e-01 | 100.0% | 19.4% |
| 3777935 | 5054.1.1.59 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 | 0.59 | 54.0 | 3.39e-01 | 100.0% | 44.1% |
| 3276403 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.59 | 51.0 | 3.38e-01 | 100.0% | 23.5% |
| 3628150 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.58 | 50.0 | 2.83e-01 | 100.0% | 13.4% |
| 4094625 | 3660.1.1.1 ↗ | alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › SecG | 0.57 | 49.0 | 4.64e-01 | 100.0% | 90.7% |
| 3726210 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.57 | 49.0 | 3.53e-01 | 100.0% | 33.9% |
| 3523709 | 5001.1.1.138 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › PF30689 | 0.57 | 49.0 | 3.47e-01 | 100.0% | 32.1% |
| 3611905 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 50.0 | 3.75e-01 | 100.0% | 46.7% |
| 3999501 | 4308.1.1.1 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like › NADAR | 0.56 | 45.0 | 3.41e-01 | 91.7% | 88.3% |
| 3802401 | 5050.1.1.2 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 | 0.56 | 50.0 | 3.37e-01 | 100.0% | 28.4% |
| 3773069 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 47.0 | 3.21e-01 | 98.3% | 48.9% |
| 3495550 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.55 | 46.0 | 3.97e-01 | 100.0% | 56.2% |
| 3934992 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 46.0 | 2.90e-01 | 98.3% | 39.7% |
| 3694417 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.53 | 46.0 | 3.00e-01 | 100.0% | 21.8% |
| None | — | 0.53 | 45.0 | 2.65e-01 | 100.0% | 11.6% | |
| 3797019 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.53 | 46.0 | 2.91e-01 | 95.0% | 19.3% |
| 5063693 | 210.1.6.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept | 0.50 | 43.0 | 2.53e-01 | 98.3% | 42.5% |