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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00289
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00289
Identity
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-202
Domain cluster:
rep: IMGVR_UViG_3300045988_172190-3300045988-Ga0495776_110548_71191_71955__D4-135
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 43.1 | 5.90e-11 | 51.0% | 87.2% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.79 | 46.0 | 6.09e-01 | 80.3% | 100.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.85 | 46.0 | 6.26e-01 | 84.1% | 98.8% |
| 4310838 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.83 | 45.0 | 6.16e-01 | 84.1% | 100.0% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.82 | 45.0 | 5.97e-01 | 84.1% | 95.6% |
| 4945828 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.80 | 46.0 | 6.10e-01 | 86.0% | 100.0% |
| 4236834 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.80 | 44.0 | 5.96e-01 | 84.7% | 100.0% |
| 4468826 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.80 | 44.0 | 5.68e-01 | 85.4% | 90.5% |
| 4457400 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.79 | 45.0 | 5.47e-01 | 85.4% | 83.8% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.79 | 45.0 | 5.89e-01 | 85.4% | 97.8% |
| 4111785 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.79 | 44.0 | 5.61e-01 | 84.1% | 90.5% |
| 77927 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.79 | 47.0 | 6.11e-01 | 82.2% | 100.0% |
| 4980287 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.78 | 40.0 | 5.38e-01 | 84.1% | 91.8% |
| 4170310 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.77 | 44.0 | 5.73e-01 | 84.7% | 98.9% |
| 5070656 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.77 | 41.0 | 5.56e-01 | 84.7% | 97.6% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.75 | 43.0 | 5.62e-01 | 84.7% | 100.0% |
| 4977317 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.75 | 45.0 | 5.18e-01 | 88.5% | 79.8% |
| 4054044 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.74 | 46.0 | 5.67e-01 | 86.6% | 97.0% |
| 3419007 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.72 | 49.0 | 5.67e-01 | 91.1% | 93.9% |
| 3588392 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.72 | 45.0 | 5.59e-01 | 87.9% | 99.0% |
| 4344289 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.70 | 54.0 | 5.96e-01 | 94.9% | 96.9% |
| 4677975 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.70 | 51.0 | 5.87e-01 | 89.2% | 100.0% |
| 3389034 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.68 | 27.0 | 4.14e-01 | 79.0% | 98.2% |
| 3958897 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.55 | 34.0 | 3.86e-01 | 98.1% | 80.0% |
| 3216375 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 23.0 | 3.16e-01 | 75.8% | 78.8% |
| 3592723 | 304.151.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase | 0.51 | 27.0 | 3.36e-01 | 92.4% | 84.2% |
| 4541620 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.51 | 40.0 | 3.44e-01 | 84.7% | 68.2% |