←Back to structures
pre3_saliva_scaffold_7_prodigal-single.1__X__X__00295
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00295
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-144
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.56 | 40.0 | 4.15e-01 | 95.0% | 80.2% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.55 | 24.0 | 3.43e-01 | 91.6% | 100.0% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 34.0 | 3.69e-01 | 72.3% | 73.8% |
| 1ae2A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 27.0 | 3.12e-01 | 70.6% | 64.0% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.53 | 41.0 | 3.62e-01 | 84.0% | 78.5% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.52 | 21.0 | 3.09e-01 | 84.9% | 89.6% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 24.0 | 2.98e-01 | 89.1% | 71.4% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 23.0 | 3.00e-01 | 79.0% | 76.8% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 33.0 | 3.50e-01 | 71.4% | 75.7% |
| 2h1eA02 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 25.0 | 3.31e-01 | 95.0% | 100.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5050697 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.54 | 24.0 | 3.42e-01 | 95.8% | 94.0% |
| 3658860 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 34.0 | 2.82e-01 | 82.4% | 33.2% |
| 4970648 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.53 | 21.0 | 3.12e-01 | 84.0% | 86.0% |
| 3619859 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 32.0 | 3.20e-01 | 100.0% | 59.2% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.52 | 24.0 | 3.11e-01 | 100.0% | 78.5% |
| 5023704 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.51 | 44.0 | 4.12e-01 | 94.1% | 92.4% |
| 3933012 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 38.0 | 2.49e-01 | 78.2% | 98.5% |
| 5054433 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 23.0 | 3.17e-01 | 95.0% | 94.0% |
| 4978826 | 873.1.1.18 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HTH_24 | 0.50 | 43.0 | 3.54e-01 | 94.1% | 59.4% |
D2
high
residues 428-539
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03288.23 best | Pox_D5 | 36.2 | 9.20e-09 | 87.5% | 89.5% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1w5sA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 50.0 | 5.19e-01 | 98.2% | 74.8% |
| 2qbyA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 50.0 | 5.52e-01 | 99.1% | 86.7% |
| 2mh2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 42.0 | 5.36e-01 | 95.5% | 100.0% |
| 2g9wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 41.0 | 5.13e-01 | 96.4% | 94.0% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 44.0 | 4.91e-01 | 96.4% | 80.0% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 48.0 | 5.48e-01 | 96.4% | 96.3% |
| 3o2pE00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 44.0 | 4.90e-01 | 97.3% | 82.6% |
| 2xigA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 43.0 | 4.70e-01 | 97.3% | 75.8% |
| 2qvoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 41.0 | 4.55e-01 | 97.3% | 75.9% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 39.0 | 4.98e-01 | 97.3% | 100.0% |
| 3htuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 45.0 | 5.32e-01 | 96.4% | 100.0% |
| 4ijaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 38.0 | 4.85e-01 | 96.4% | 100.0% |
| 2v6eA04 | 1.10.10.2040 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 42.0 | 4.55e-01 | 100.0% | 76.3% |
| 3bz6A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 44.0 | 5.07e-01 | 100.0% | 97.4% |
| 6do0A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 40.0 | 4.19e-01 | 97.3% | 67.0% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 40.0 | 4.05e-01 | 97.3% | 60.7% |
| 4wcgA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 37.0 | 4.64e-01 | 96.4% | 100.0% |
| 5hvqC01 | 3.90.1150.220 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.65 | 44.0 | 4.95e-01 | 96.4% | 96.2% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 40.0 | 4.85e-01 | 97.3% | 100.0% |
| 5iceA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 40.0 | 4.19e-01 | 97.3% | 68.3% |
| 2hoeA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 34.0 | 4.47e-01 | 97.3% | 100.0% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 39.0 | 4.12e-01 | 99.1% | 68.3% |
| 1vtnC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 42.0 | 4.42e-01 | 97.3% | 75.5% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 39.0 | 4.31e-01 | 97.3% | 79.3% |
| 5bpdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 37.0 | 4.33e-01 | 96.4% | 86.7% |
| 7xc2A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 4.50e-01 | 99.1% | 77.4% |
| 2ph7A01 | 1.10.3400.10 | Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like | 0.57 | 47.0 | 4.54e-01 | 89.3% | 80.6% |
| 2ncoA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.55 | 36.0 | 3.75e-01 | 96.4% | 71.6% |
| 3l4gB01 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.55 | 35.0 | 3.86e-01 | 83.9% | 79.8% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 34.0 | 3.45e-01 | 97.3% | 60.9% |
| 2be4A02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 35.0 | 3.65e-01 | 96.4% | 72.3% |
| 1booA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 39.0 | 2.97e-01 | 83.0% | 69.9% |
ECOD (74)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3636754 | 101.1.2.466 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_MCM3_C | 0.80 | 51.0 | 6.03e-01 | 95.5% | 91.3% |
| 4991793 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 47.0 | 3.71e-01 | 97.3% | 30.7% |
| 3480455 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.77 | 53.0 | 6.17e-01 | 99.1% | 98.8% |
| 3249045 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.77 | 53.0 | 5.00e-01 | 98.2% | 60.8% |
| 3498779 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.76 | 53.0 | 6.03e-01 | 99.1% | 95.3% |
| 5080644 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 49.0 | 5.86e-01 | 97.3% | 98.7% |
| 3227729 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.74 | 52.0 | 5.39e-01 | 99.1% | 77.1% |
| 3739675 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.72 | 50.0 | 5.06e-01 | 97.3% | 71.8% |
| 3940471 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 51.0 | 5.78e-01 | 97.3% | 98.8% |
| 3597393 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 50.0 | 4.55e-01 | 98.2% | 54.7% |
| 3519165 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 47.0 | 5.30e-01 | 96.4% | 89.4% |
| 4946290 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 41.0 | 5.09e-01 | 100.0% | 98.5% |
| None | — | 0.70 | 50.0 | 5.31e-01 | 99.1% | 82.0% | |
| 5033207 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 46.0 | 4.42e-01 | 98.2% | 59.2% |
| 4182618 | 101.1.2.616 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27833 | 0.70 | 47.0 | 4.85e-01 | 99.1% | 73.3% |
| 5077356 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 53.0 | 5.15e-01 | 99.1% | 72.0% |
| 4933807 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 47.0 | 5.32e-01 | 97.3% | 92.9% |
| 3181301 | 101.1.2.569 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28722 | 0.69 | 55.0 | 5.02e-01 | 84.8% | 84.8% |
| 3581108 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 49.0 | 4.81e-01 | 97.3% | 69.2% |
| 5071094 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 45.0 | 5.14e-01 | 97.3% | 92.5% |
| 4972260 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 4.99e-01 | 99.1% | 82.1% |
| 5071551 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 4.96e-01 | 99.1% | 82.1% |
| 3924465 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 50.0 | 4.87e-01 | 97.3% | 70.8% |
| 3994510 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 46.0 | 4.31e-01 | 99.1% | 56.4% |
| 3244128 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 50.0 | 5.43e-01 | 99.1% | 92.6% |
| 5028531 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 42.0 | 4.63e-01 | 98.2% | 78.9% |
| 3238923 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.67 | 52.0 | 3.33e-01 | 100.0% | 17.1% |
| 3946676 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 48.0 | 4.93e-01 | 99.1% | 77.3% |
| 3797519 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 52.0 | 3.26e-01 | 100.0% | 16.2% |
| 4545670 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.67 | 47.0 | 5.00e-01 | 99.1% | 82.8% |
| 4625648 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.66 | 43.0 | 4.38e-01 | 97.3% | 67.0% |
| 3617345 | 101.1.2.151 ↗ | alpha arrays › HTH › HTH › winged helix domain › COR | 0.66 | 50.0 | 5.27e-01 | 99.1% | 89.0% |
| 3169535 | 101.1.2.207 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH | 0.66 | 46.0 | 4.82e-01 | 100.0% | 81.0% |
| 3639498 | 101.1.2.722 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF6581, PF28722 | 0.65 | 51.0 | 3.40e-01 | 100.0% | 22.4% |
| 3719981 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.64 | 42.0 | 4.56e-01 | 96.4% | 78.9% |
| 3652150 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 48.0 | 5.17e-01 | 100.0% | 91.6% |
| 3550851 | 101.1.2.86 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 | 0.64 | 45.0 | 4.98e-01 | 96.4% | 95.3% |
| 4971999 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 49.0 | 4.75e-01 | 99.1% | 72.8% |
| 3840298 | 101.1.2.394 ↗ | alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 | 0.64 | 49.0 | 4.68e-01 | 100.0% | 70.0% |
| 4973627 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.63 | 43.0 | 4.22e-01 | 99.1% | 62.4% |
| 3512685 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.63 | 48.0 | 4.43e-01 | 98.2% | 64.0% |
| 3224329 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 49.0 | 4.73e-01 | 99.1% | 73.6% |
| 3926383 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.62 | 48.0 | 4.40e-01 | 97.3% | 62.2% |
| 3954639 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 40.0 | 4.51e-01 | 98.2% | 88.2% |
| 4017134 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 46.0 | 4.30e-01 | 100.0% | 65.2% |
| 3785317 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.61 | 48.0 | 4.69e-01 | 97.3% | 77.5% |
| 5051570 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 4.55e-01 | 99.1% | 80.0% |
| 3868765 | 101.1.2.178 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_61 | 0.59 | 44.0 | 4.77e-01 | 99.1% | 94.7% |
| 3605731 | 101.1.2.291 ↗ | alpha arrays › HTH › HTH › winged helix domain › La_HTH_kDCL | 0.58 | 49.0 | 5.02e-01 | 97.3% | 96.2% |
| 3738687 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.58 | 44.0 | 4.12e-01 | 97.3% | 64.3% |
| 3662349 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.58 | 43.0 | 4.28e-01 | 99.1% | 73.3% |
| 3258350 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 44.0 | 4.39e-01 | 99.1% | 76.7% |
| 3898389 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 37.0 | 3.83e-01 | 90.2% | 68.6% |
| 3481547 | 101.1.2.68 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 | 0.57 | 44.0 | 4.06e-01 | 97.3% | 62.0% |
| 3962321 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 40.0 | 4.21e-01 | 100.0% | 82.0% |
| 3376263 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 4.39e-01 | 99.1% | 95.3% |
| 3444066 | 101.33.1.1 ↗ | alpha arrays › HTH › Replication foci-targeting sequence C-terminal domain › Replication foci-targeting sequence C-terminal domain › DNMT1-RFD | 0.56 | 43.0 | 4.66e-01 | 92.0% | 98.9% |
| 3501333 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.56 | 44.0 | 4.42e-01 | 97.3% | 82.6% |
| 3298593 | 109.4.1.43 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP | 0.56 | 40.0 | 3.03e-01 | 99.1% | 30.7% |
| 3245958 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.56 | 44.0 | 4.51e-01 | 97.3% | 87.3% |
| 3472168 | 101.1.2.147 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC4_C | 0.55 | 46.0 | 4.36e-01 | 97.3% | 74.8% |
| 3926251 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.55 | 44.0 | 4.51e-01 | 99.1% | 88.2% |
| 3622571 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.55 | 44.0 | 4.27e-01 | 97.3% | 76.8% |
| 5014584 | 101.1.2.932 ↗ | alpha arrays › HTH › HTH › winged helix domain › wHTH-PRTase_assc | 0.54 | 38.0 | 4.21e-01 | 97.3% | 96.5% |
| 3724091 | 101.1.21.1 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N | 0.54 | 48.0 | 3.73e-01 | 100.0% | 55.7% |
| 3262459 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 42.0 | 4.34e-01 | 93.8% | 88.6% |
| 3846407 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 47.0 | 4.27e-01 | 95.5% | 93.3% |
| 3635542 | 101.1.2.101 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cdc6_C | 0.53 | 48.0 | 4.20e-01 | 97.3% | 78.8% |
| 3691691 | 101.1.2.77 ↗ | alpha arrays › HTH › HTH › winged helix domain › ESCRT-II | 0.53 | 42.0 | 4.14e-01 | 99.1% | 80.8% |
| 3547256 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.53 | 45.0 | 4.43e-01 | 100.0% | 87.5% |
| 3554123 | 101.1.2.73 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 | 0.52 | 46.0 | 4.15e-01 | 98.2% | 93.5% |
| 3611255 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 40.0 | 4.14e-01 | 99.1% | 90.5% |
| 3480280 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.51 | 30.0 | 3.39e-01 | 90.2% | 77.6% |
| 3844467 | 108.1.1.29 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 | 0.51 | 31.0 | 3.37e-01 | 89.3% | 74.4% |
D3
medium
residues 253-361
Domain cluster:
rep: highly_derived_D5-like_helicase-primase__YP_003406787__Marseillevirus_marseillevirus__694581__D555-677
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tueD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 67.0 | 5.40e-01 | 100.0% | 50.5% |
| 2r44A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 58.0 | 5.08e-01 | 100.0% | 74.3% |
| 3ja8204 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 55.0 | 3.95e-01 | 100.0% | 38.2% |
| 3ny7A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.60 | 50.0 | 4.90e-01 | 99.1% | 84.7% |
| 6infA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.57 | 38.0 | 3.29e-01 | 100.0% | 42.6% |
| 1nqkA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.54 | 47.0 | 3.42e-01 | 100.0% | 63.8% |
| 3raoB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.54 | 47.0 | 3.39e-01 | 100.0% | 66.2% |
| 1onfA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 36.0 | 3.52e-01 | 87.2% | 62.7% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.53 | 46.0 | 3.29e-01 | 97.2% | 54.5% |
| 3guwA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 47.0 | 3.75e-01 | 100.0% | 67.4% |
| 2i7gB00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.53 | 46.0 | 3.35e-01 | 100.0% | 66.7% |
| 2panA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.53 | 47.0 | 4.08e-01 | 100.0% | 74.1% |
| 5bu9A00 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.52 | 46.0 | 3.33e-01 | 100.0% | 66.3% |
| 2nxwA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.52 | 46.0 | 3.97e-01 | 100.0% | 67.2% |
| 1amuA02 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 3.85e-01 | 100.0% | 67.9% |
| 6tq5A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 45.0 | 3.56e-01 | 100.0% | 90.4% |
| 3ogkH02 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.51 | 45.0 | 2.96e-01 | 100.0% | 83.9% |
| 6cmzA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 36.0 | 3.56e-01 | 74.3% | 68.1% |
| 1bdbA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 44.0 | 3.42e-01 | 100.0% | 83.9% |
| 1f1jA00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 42.0 | 3.37e-01 | 93.6% | 92.6% |
| 1uqtA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 44.0 | 3.47e-01 | 100.0% | 81.9% |
| 2q9uA02 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.50 | 42.0 | 3.90e-01 | 100.0% | 71.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029777 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.90 | 83.0 | 6.09e-01 | 100.0% | 41.6% |
| 5003620 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.90 | 83.0 | 5.64e-01 | 100.0% | 31.6% |
| 5081314 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.88 | 80.0 | 5.89e-01 | 100.0% | 40.4% |
| 5022020 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.85 | 80.0 | 5.85e-01 | 100.0% | 41.9% |
| 3945876 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.85 | 75.0 | 5.55e-01 | 100.0% | 39.2% |
| 4959586 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.83 | 78.0 | 5.63e-01 | 100.0% | 39.1% |
| 4973289 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.83 | 78.0 | 5.71e-01 | 100.0% | 42.6% |
| 3954608 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.81 | 76.0 | 5.61e-01 | 100.0% | 41.9% |
| 5011495 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.80 | 71.0 | 5.73e-01 | 100.0% | 52.0% |
| 3253892 | 2004.1.1.409 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906 | 0.79 | 68.0 | 5.50e-01 | 100.0% | 50.8% |
| 4931926 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 66.0 | 4.72e-01 | 100.0% | 33.0% |
| 2704206 | 2004.1.1.57 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Parvo_NS1 | 0.71 | 65.0 | 4.74e-01 | 100.0% | 38.8% |
| 5058121 | 2004.1.1.1224 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF31144 | 0.69 | 62.0 | 4.47e-01 | 100.0% | 35.7% |
| 4985671 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.68 | 61.0 | 4.58e-01 | 100.0% | 46.7% |
| 3614893 | 2004.1.1.493 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_2, AAA_5 | 0.67 | 61.0 | 4.27e-01 | 100.0% | 76.5% |
| 4443044 | 2004.1.1.1014 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27228 | 0.67 | 60.0 | 4.33e-01 | 100.0% | 35.2% |
| 5006563 | 2004.1.1.156 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 | 0.66 | 59.0 | 4.51e-01 | 100.0% | 65.9% |
| 3702069 | 2004.1.1.181 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_7 | 0.65 | 58.0 | 4.73e-01 | 100.0% | 61.0% |
| 5023501 | 2004.1.1.58 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase | 0.65 | 58.0 | 4.41e-01 | 100.0% | 62.3% |
| 3981677 | 2004.1.1.22 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat | 0.64 | 58.0 | 4.46e-01 | 100.0% | 53.9% |
| 3972249 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 56.0 | 4.71e-01 | 100.0% | 63.2% |
| 3967690 | 2004.1.1.319 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF815 | 0.61 | 53.0 | 4.49e-01 | 100.0% | 57.3% |
| 3729591 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.58 | 50.0 | 3.05e-01 | 100.0% | 28.6% |
| 3309390 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.57 | 47.0 | 4.46e-01 | 93.6% | 76.2% |
| 4890989 | 148.1.3.231 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_7 | 0.56 | 41.0 | 4.31e-01 | 81.7% | 85.1% |
| 4674308 | 2002.1.1.35 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DAHP_synth_1 | 0.56 | 45.0 | 3.80e-01 | 91.7% | 63.9% |
| 3218453 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 50.0 | 3.71e-01 | 100.0% | 43.5% |
| 3594143 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 50.0 | 3.55e-01 | 100.0% | 59.4% |
| 3653298 | 2004.1.1.46 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM | 0.55 | 44.0 | 3.72e-01 | 86.2% | 51.1% |
| 3732818 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.54 | 49.0 | 4.05e-01 | 100.0% | 65.1% |
| 3256151 | 207.1.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 | 0.54 | 46.0 | 3.00e-01 | 94.5% | 34.2% |
| 3263893 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.54 | 45.0 | 3.10e-01 | 91.7% | 46.3% |
| 5046344 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.54 | 47.0 | 3.78e-01 | 98.2% | 81.2% |
| 3288748 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.53 | 45.0 | 3.27e-01 | 97.2% | 53.7% |
| 4971136 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.53 | 47.0 | 3.41e-01 | 100.0% | 41.2% |
| 5045091 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.53 | 46.0 | 3.52e-01 | 100.0% | 68.6% |
| 4972761 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 47.0 | 3.70e-01 | 100.0% | 81.9% |
| 3231322 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.52 | 45.0 | 3.74e-01 | 100.0% | 71.7% |
| 3740727 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.51 | 27.0 | 2.95e-01 | 85.3% | 60.0% |
| 3743874 | 246.2.1.7 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B | 0.51 | 44.0 | 3.20e-01 | 100.0% | 56.6% |