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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00326
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00326
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-67
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.80 | 39.0 | 4.25e-01 | 73.8% | 55.4% |
| 4kg0A01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.69 | 61.0 | 4.62e-01 | 100.0% | 71.2% |
| 7ccbA01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.68 | 60.0 | 4.68e-01 | 100.0% | 73.8% |
| 3d79A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.68 | 52.0 | 4.97e-01 | 81.5% | 81.1% |
| 4dooA01 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.67 | 52.0 | 4.07e-01 | 87.7% | 61.7% |
| 2xstA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.65 | 57.0 | 4.40e-01 | 100.0% | 68.5% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.65 | 48.0 | 4.67e-01 | 80.0% | 85.9% |
| 3wa1A01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.62 | 54.0 | 4.13e-01 | 100.0% | 98.1% |
| 3hbkA00 | 2.60.120.560 | Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 | 0.62 | 54.0 | 3.75e-01 | 100.0% | 64.5% |
| 3e1sA04 | 2.30.30.940 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 44.0 | 4.40e-01 | 98.5% | 73.9% |
| 2r6iA01 | 3.30.2180.10 | Alpha Beta › 2-Layer Sandwich › ATP12-like › ATP12-like | 0.61 | 44.0 | 3.97e-01 | 78.5% | 85.4% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 53.0 | 4.15e-01 | 100.0% | 73.9% |
| 3ilfA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 52.0 | 3.55e-01 | 100.0% | 59.1% |
| 4awdB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 53.0 | 3.46e-01 | 100.0% | 59.2% |
| 3ecqA01 | 2.60.120.870 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 51.0 | 3.80e-01 | 100.0% | 67.8% |
| 1ajoA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 42.0 | 2.98e-01 | 78.5% | 92.0% |
| 1jhnA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 50.0 | 3.49e-01 | 100.0% | 58.6% |
| 1lckA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.58 | 45.0 | 4.68e-01 | 100.0% | 94.9% |
| 4iimA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 43.0 | 4.53e-01 | 100.0% | 94.7% |
| 4m4zA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 39.0 | 4.32e-01 | 95.4% | 100.0% |
| 2h92A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 43.0 | 3.01e-01 | 83.1% | 34.3% |
| 1x6bA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 44.0 | 4.44e-01 | 100.0% | 87.5% |
| 2rqrA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.56 | 44.0 | 3.66e-01 | 100.0% | 47.1% |
| 2cudA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 43.0 | 4.07e-01 | 100.0% | 72.2% |
| 2fpeA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 44.0 | 4.48e-01 | 100.0% | 93.5% |
| 3qc2B00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.55 | 47.0 | 3.00e-01 | 100.0% | 81.2% |
| 1y0mA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 42.0 | 4.32e-01 | 100.0% | 91.8% |
| 8f5pC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 43.0 | 2.79e-01 | 87.7% | 23.5% |
| 1ej8A00 | 2.60.40.200 | Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain | 0.52 | 44.0 | 3.54e-01 | 98.5% | 97.1% |
| 4ehcA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 40.0 | 2.76e-01 | 89.2% | 98.6% |
| 3gjyA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 2.93e-01 | 95.4% | 36.9% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 39.0 | 2.59e-01 | 86.2% | 23.2% |
| 5k19A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 37.0 | 2.40e-01 | 81.5% | 25.8% |
| 4cswA02 | 3.40.366.30 | Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 | 0.51 | 41.0 | 3.05e-01 | 90.8% | 44.3% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4930563 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.73 | 60.0 | 5.86e-01 | 98.5% | 84.3% |
| 3590315 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.71 | 61.0 | 5.83e-01 | 100.0% | 82.7% |
| 5054597 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.70 | 59.0 | 5.70e-01 | 100.0% | 82.7% |
| 5012053 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.68 | 59.0 | 5.65e-01 | 100.0% | 85.1% |
| 3404024 | 10.1.1.23 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized | 0.66 | 57.0 | 4.30e-01 | 100.0% | 68.2% |
| 3701091 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.66 | 52.0 | 3.98e-01 | 89.2% | 90.0% |
| 4160181 | 10.1.1.23 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized | 0.65 | 57.0 | 4.24e-01 | 100.0% | 67.4% |
| 5049994 | 243.6.1.4 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA | 0.65 | 50.0 | 4.75e-01 | 81.5% | 80.0% |
| 3865117 | 10.1.1.23 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized | 0.65 | 57.0 | 4.12e-01 | 100.0% | 66.8% |
| 3404019 | 10.1.1.23 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized | 0.64 | 56.0 | 4.20e-01 | 100.0% | 70.0% |
| 4971539 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.64 | 49.0 | 4.67e-01 | 81.5% | 78.7% |
| 3891853 | 10.1.1.23 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized | 0.64 | 55.0 | 4.05e-01 | 100.0% | 62.1% |
| 3235525 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.63 | 49.0 | 3.47e-01 | 100.0% | 27.5% |
| 3255179 | 10.1.1.35 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 | 0.63 | 54.0 | 4.13e-01 | 98.5% | 76.9% |
| 3345329 | 813.1.1.2 ↗ | a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_2 | 0.63 | 50.0 | 3.51e-01 | 87.7% | 42.6% |
| 4952114 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.61 | 49.0 | 4.85e-01 | 96.9% | 85.7% |
| 3696616 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.60 | 51.0 | 4.01e-01 | 98.5% | 94.7% |
| 3618369 | 330.1.1.24 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Paxt-1_C | 0.60 | 45.0 | 3.91e-01 | 80.0% | 55.0% |
| 1391369 | 10.1.1.42 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH101_N | 0.60 | 51.0 | 3.77e-01 | 100.0% | 65.6% |
| 3801175 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 44.0 | 3.86e-01 | 81.5% | 56.0% |
| 4948218 | 243.6.1.12 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › PUA | 0.59 | 44.0 | 4.06e-01 | 80.0% | 78.8% |
| 4978884 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.59 | 44.0 | 4.26e-01 | 81.5% | 82.7% |
| 3533688 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 42.0 | 4.06e-01 | 76.9% | 73.3% |
| 3760107 | 10.1.1.3 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin | 0.58 | 51.0 | 3.36e-01 | 100.0% | 52.3% |
| 3903323 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 43.0 | 4.20e-01 | 100.0% | 70.7% |
| 3240651 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 45.0 | 4.21e-01 | 100.0% | 68.8% |
| 3482646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 45.0 | 3.20e-01 | 100.0% | 27.5% |
| 3469800 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 45.0 | 4.21e-01 | 100.0% | 68.8% |
| 3623786 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.58 | 44.0 | 4.42e-01 | 100.0% | 83.1% |
| 3216746 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.58 | 44.0 | 4.63e-01 | 98.5% | 98.2% |
| 3445173 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 43.0 | 4.31e-01 | 96.9% | 78.5% |
| 3259044 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.57 | 43.0 | 4.60e-01 | 100.0% | 98.2% |
| 4246671 | 7503.1.1.3 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N | 0.57 | 43.0 | 3.64e-01 | 81.5% | 87.3% |
| 3495480 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 44.0 | 4.56e-01 | 100.0% | 91.7% |
| 3294867 | 3459.1.1.3 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 | 0.57 | 49.0 | 4.40e-01 | 98.5% | 93.7% |
| 3934527 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.46e-01 | 95.4% | 94.5% |
| 3550579 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 43.0 | 4.58e-01 | 100.0% | 98.2% |
| 3765126 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.57 | 43.0 | 4.54e-01 | 98.5% | 98.2% |
| 5018327 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.57 | 48.0 | 3.50e-01 | 93.8% | 57.1% |
| 158943 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 43.0 | 4.13e-01 | 100.0% | 70.9% |
| 1140051 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.56 | 40.0 | 4.42e-01 | 100.0% | 100.0% |
| 3627275 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 45.0 | 4.64e-01 | 100.0% | 98.3% |
| 3946165 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.56 | 40.0 | 4.21e-01 | 92.3% | 90.9% |
| 4096240 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.56 | 47.0 | 4.17e-01 | 100.0% | 95.0% |
| 3479037 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 45.0 | 4.22e-01 | 100.0% | 75.0% |
| 3931369 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.55 | 38.0 | 4.19e-01 | 89.2% | 98.0% |
| 3305644 | 5.3.1.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin | 0.54 | 41.0 | 3.47e-01 | 86.2% | 84.7% |
| 3838834 | 865.1.1.0 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain | 0.54 | 46.0 | 3.39e-01 | 96.9% | 91.9% |
| 4012540 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 40.0 | 3.90e-01 | 81.5% | 77.3% |
| 3357079 | 5.3.1.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin | 0.54 | 39.0 | 3.38e-01 | 83.1% | 83.3% |
| 5034238 | 325.1.6.2 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › Peptidase_M23 | 0.54 | 39.0 | 2.96e-01 | 81.5% | 99.4% |
| 3422222 | 5.3.1.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin | 0.53 | 39.0 | 3.27e-01 | 80.0% | 54.2% |
| 3936424 | 59.1.1.5 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 | 0.53 | 35.0 | 3.08e-01 | 70.8% | 77.1% |
| 3932147 | 6.1.1.0 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil | 0.52 | 39.0 | 3.03e-01 | 84.6% | 60.0% |
| 4022704 | 5.1.5.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 | 0.52 | 45.0 | 2.78e-01 | 96.9% | 27.2% |
| 3415548 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.51 | 42.0 | 3.88e-01 | 95.4% | 88.9% |
| 4024240 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 39.0 | 3.70e-01 | 100.0% | 70.0% |
| 4655719 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.51 | 43.0 | 3.88e-01 | 98.5% | 68.9% |
| 4927872 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.51 | 41.0 | 3.42e-01 | 90.8% | 64.2% |
| 3380863 | 2007.2.3.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase | 0.50 | 39.0 | 2.26e-01 | 87.7% | 45.6% |
| 3241110 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.50 | 40.0 | 3.14e-01 | 92.3% | 45.8% |