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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00335

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00335

Identity

Kingdom:
phage

Quality

57.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 119-214
PDB
D2 high residues 222-335
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jvwA01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.66 34.0 4.49e-01 79.8% 93.3%
1hw1A02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.52 33.0 3.03e-01 95.6% 47.7%
1a00B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 46.0 4.27e-01 99.1% 87.0%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.51 34.0 3.40e-01 77.2% 63.1%
1ithA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 44.0 4.14e-01 96.5% 92.9%
2yjkC00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 39.0 3.57e-01 84.2% 86.0%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3483525 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.52 41.0 3.57e-01 86.0% 91.1%
3508526 180.1.1.6 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › FIT 0.50 38.0 3.05e-01 80.7% 82.9%
D3 medium residues 5-30_44-112
PDB