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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00372
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00372
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-35_54-132
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 40.0 | 4.41e-01 | 99.0% | 81.5% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.60 | 42.0 | 4.49e-01 | 73.8% | 84.3% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.57 | 40.0 | 4.05e-01 | 100.0% | 73.7% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 38.0 | 3.19e-01 | 72.8% | 55.9% |
| 1gwiA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 39.0 | 2.72e-01 | 76.7% | 49.3% |
| 2xi9A03 | 1.10.150.480 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 44.0 | 4.51e-01 | 92.2% | 93.1% |
| 1ldjA02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.52 | 46.0 | 4.36e-01 | 99.0% | 100.0% |
| 3fhnA04 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.52 | 39.0 | 3.64e-01 | 79.6% | 84.0% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.51 | 36.0 | 3.96e-01 | 99.0% | 94.9% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.50 | 41.0 | 3.92e-01 | 96.1% | 74.4% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4571267 | 1079.1.1.13 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp | 0.69 | 48.0 | 4.00e-01 | 71.8% | 82.6% |
| 4392521 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.62 | 43.0 | 3.14e-01 | 72.8% | 68.4% |
| 4313126 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 39.0 | 2.90e-01 | 98.1% | 25.1% |
| 3701680 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.59 | 40.0 | 4.06e-01 | 97.1% | 71.7% |
| 3942041 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.57 | 41.0 | 2.97e-01 | 76.7% | 73.9% |
| 4145161 | 109.4.1.3068 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2225 | 0.57 | 39.0 | 3.26e-01 | 95.1% | 41.1% |
| 5024162 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.55 | 32.0 | 3.14e-01 | 96.1% | 51.8% |
| 3796461 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 37.0 | 4.23e-01 | 97.1% | 96.0% |
| 3223706 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.55 | 46.0 | 3.83e-01 | 100.0% | 53.1% |
| 5043580 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.55 | 34.0 | 3.27e-01 | 98.1% | 52.5% |
| 4009669 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.54 | 39.0 | 3.25e-01 | 99.0% | 41.6% |
| 3201394 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.52 | 46.0 | 3.33e-01 | 100.0% | 41.9% |
| 3472846 | 509.1.1.10 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › HHD_RTEL1 | 0.51 | 41.0 | 4.13e-01 | 87.4% | 95.2% |
| 3715807 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 45.0 | 3.58e-01 | 98.1% | 85.4% |
| 3944699 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.51 | 35.0 | 3.78e-01 | 92.2% | 83.3% |
D2
medium
residues 36-53_133-216
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wgfA01 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.58 | 30.0 | 4.01e-01 | 100.0% | 98.1% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.57 | 48.0 | 5.01e-01 | 98.0% | 100.0% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 40.0 | 3.62e-01 | 91.2% | 55.8% |
| 6wk3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 46.0 | 4.16e-01 | 99.0% | 65.5% |
| 1un8A02 | 1.25.40.340 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain | 0.53 | 45.0 | 3.78e-01 | 99.0% | 93.2% |
| 2ba0A03 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 31.0 | 3.44e-01 | 90.2% | 72.3% |
| 2vxdA00 | 1.10.10.2100 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Nucleophosmin, C-terminal domain | 0.52 | 28.0 | 3.76e-01 | 76.5% | 100.0% |
| 1ug3A01 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 39.0 | 3.19e-01 | 83.3% | 50.3% |
| 6wxrA01 | 1.10.640.10 | Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type | 0.50 | 44.0 | 2.88e-01 | 97.1% | 62.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969023 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.56 | 50.0 | 3.29e-01 | 100.0% | 81.5% |
| 5020941 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.54 | 39.0 | 3.61e-01 | 74.5% | 81.5% |
| 4967414 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.53 | 38.0 | 3.52e-01 | 74.5% | 77.0% |
| 5068927 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.53 | 37.0 | 3.64e-01 | 74.5% | 87.8% |
| 5001109 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.53 | 45.0 | 3.04e-01 | 100.0% | 83.8% |
| 3688460 | 5054.1.1.83 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Tcp11 | 0.52 | 45.0 | 3.60e-01 | 100.0% | 89.1% |
| 3781957 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.51 | 37.0 | 2.98e-01 | 78.4% | 64.7% |