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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00389
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00389
Identity
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 21-79
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bqnA02 | 1.10.10.2490 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 45.0 | 3.57e-01 | 71.2% | 72.2% |
| 4y97D00 | 1.10.3200.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › DNA Polymerase alpha, zinc finger | 0.60 | 42.0 | 3.10e-01 | 76.3% | 86.0% |
| 2of5H00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 44.0 | 3.84e-01 | 93.2% | 71.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3613855 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 44.0 | 4.21e-01 | 89.8% | 100.0% |
| 4943127 | 251.1.1.2 ↗ | a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS_domain_II | 0.53 | 43.0 | 3.78e-01 | 96.6% | 84.2% |
| 3319950 | 603.1.1.197 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF28744 | 0.52 | 39.0 | 3.03e-01 | 86.4% | 74.8% |
| 3881313 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 32.0 | 3.17e-01 | 91.5% | 60.0% |
D2
medium
residues 80-211
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.61 | 47.0 | 4.16e-01 | 82.6% | 72.0% |
| 1of5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 37.0 | 3.51e-01 | 86.4% | 55.2% |
| 3e4wA02 | 2.40.180.10 | Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain | 0.57 | 42.0 | 3.66e-01 | 76.5% | 62.8% |
| 3aa0B02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.57 | 39.0 | 3.76e-01 | 70.5% | 65.2% |
| 5da9A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 47.0 | 3.46e-01 | 89.4% | 99.7% |
| 1lshA01 | 2.30.230.10 | Mainly Beta › Roll › Lipovitellin-phosvitin complex; beta-sheet shell regions › Lipovitellin; beta-sheet shell regions, chain A | 0.55 | 44.0 | 3.54e-01 | 84.8% | 84.0% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.52 | 36.0 | 3.48e-01 | 70.5% | 62.6% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 38.0 | 3.48e-01 | 75.8% | 60.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4002608 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.65 | 51.0 | 4.07e-01 | 83.3% | 49.8% |
| 4003858 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.63 | 49.0 | 3.31e-01 | 81.1% | 36.4% |
| 1822898 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.57 | 40.0 | 3.64e-01 | 72.7% | 90.5% |
| 4991405 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.56 | 46.0 | 3.33e-01 | 90.2% | 96.5% |
| 3303119 | 9.23.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin | 0.56 | 44.0 | 4.42e-01 | 84.8% | 85.1% |
| 3541529 | 883.1.1.15 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C | 0.56 | 48.0 | 3.38e-01 | 94.7% | 79.5% |
| 4447644 | 2004.1.1.514 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B | 0.54 | 44.0 | 3.20e-01 | 88.6% | 100.0% |
| 3829251 | 9.1.1.34 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin | 0.54 | 44.0 | 4.00e-01 | 87.1% | 72.0% |
| 3281242 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.52 | 36.0 | 3.66e-01 | 71.2% | 86.2% |
| 861 | 9.3.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Eryth_link_C | 0.52 | 38.0 | 3.86e-01 | 75.8% | 78.9% |
| 3726881 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.51 | 40.0 | 3.68e-01 | 84.1% | 81.7% |
| 3971296 | 243.1.1.5 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 | 0.51 | 35.0 | 3.62e-01 | 70.5% | 85.3% |
| 3957821 | 243.1.1.77 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 | 0.51 | 35.0 | 3.61e-01 | 71.2% | 91.4% |
| 3840079 | 4998.1.1.1 ↗ | beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 | 0.51 | 41.0 | 3.96e-01 | 87.1% | 89.3% |