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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00409

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00409

Identity

Kingdom:
phage

Quality

86.7 mean pLDDT

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-125
PDB
Domain cluster: rep: NC_074662.1__YP_010773350.1__QIT84_gp057__00057__DFULL
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 36.0 4.71e-01 96.7% 97.0%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 29.0 3.39e-01 80.3% 57.8%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 35.0 4.02e-01 83.6% 72.5%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 28.0 3.46e-01 94.3% 66.2%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 24.0 3.59e-01 83.6% 88.9%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 35.0 4.18e-01 82.8% 84.3%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.60 49.0 4.98e-01 100.0% 89.8%
4gzuB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 32.0 3.65e-01 83.6% 68.1%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 26.0 3.52e-01 82.0% 78.7%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 34.0 4.10e-01 95.1% 88.7%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 23.0 3.10e-01 80.3% 74.1%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.54 25.0 3.42e-01 86.9% 96.1%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 25.0 3.39e-01 82.8% 87.7%
1q1gA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.51 38.0 3.12e-01 80.3% 98.4%
2j3tC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 35.0 3.34e-01 70.5% 95.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3495619 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.72 39.0 4.09e-01 83.6% 58.2%
3931122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 37.0 4.14e-01 83.6% 67.4%
3603020 2.14.1.1 ↗ beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like › HupF_HypC 0.66 24.0 3.53e-01 83.6% 72.7%
4114247 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.65 28.0 3.62e-01 70.5% 68.6%
3436255 2.1.1.29 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep-A_N 0.65 35.0 4.33e-01 86.9% 85.3%
3896484 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.65 37.0 3.80e-01 83.6% 57.5%
3706686 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.63 31.0 4.07e-01 71.3% 87.7%
3737804 220.1.1.121 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SLA1 0.62 35.0 3.76e-01 83.6% 62.9%
3214387 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 33.0 3.71e-01 82.8% 67.8%
3260369 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 23.0 3.70e-01 82.0% 100.0%
1567587 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 26.0 3.26e-01 80.3% 67.6%
3392308 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.58 36.0 4.07e-01 94.3% 80.0%
3164388 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.58 28.0 3.59e-01 83.6% 81.5%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 32.0 3.59e-01 87.7% 68.4%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 26.0 3.03e-01 83.6% 61.1%
3408090 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 27.0 3.42e-01 92.6% 84.3%
4936924 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 28.0 3.01e-01 88.5% 57.1%
5006353 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 33.0 3.51e-01 100.0% 74.3%
3964629 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 37.0 3.72e-01 79.5% 73.6%
4382135 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.51 31.0 3.28e-01 100.0% 66.4%
4002643 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.83e-01 95.9% 88.4%
4532721 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.51 39.0 3.29e-01 82.0% 98.1%