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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00411

Bact-Vir

pre3_saliva_scaffold_7_prodigal-single.1__X__X__00411

Identity

Kingdom:
phage

Quality

91.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-126
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 35.0 4.52e-01 96.7% 98.5%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.64 50.0 5.15e-01 100.0% 88.1%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 28.0 3.43e-01 95.9% 66.2%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 27.0 3.73e-01 82.1% 82.0%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.61 25.0 3.39e-01 70.7% 71.2%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 23.0 3.52e-01 83.7% 88.9%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 28.0 3.74e-01 82.1% 82.8%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 35.0 4.27e-01 80.5% 90.0%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 34.0 3.43e-01 85.4% 55.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 27.0 3.62e-01 82.9% 86.2%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 34.0 3.48e-01 84.6% 61.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 45.0 3.54e-01 87.0% 99.6%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 33.0 3.43e-01 84.6% 64.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 24.0 3.37e-01 82.9% 88.7%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 36.0 3.95e-01 79.7% 81.6%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.54 29.0 3.51e-01 77.2% 82.9%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 34.0 3.75e-01 71.5% 80.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.65e-01 73.2% 77.9%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.51 23.0 3.12e-01 85.4% 83.6%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 39.0 4.06e-01 80.5% 99.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3436255 2.1.1.29 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep-A_N 0.66 36.0 4.42e-01 87.8% 85.3%
1567587 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 27.0 3.49e-01 80.5% 67.6%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 24.0 3.15e-01 80.5% 60.0%
3530195 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 35.0 3.55e-01 84.6% 55.8%
3867672 2.1.1.22 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN 0.61 33.0 4.20e-01 99.2% 92.6%
3870514 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 33.0 3.44e-01 84.6% 56.5%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.58 27.0 3.15e-01 84.6% 58.9%
4411726 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.58 25.0 3.44e-01 82.9% 78.5%
1877235 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 35.0 4.02e-01 81.3% 84.4%
4992039 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.57 29.0 3.59e-01 78.0% 79.7%
3392308 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.56 36.0 4.03e-01 70.7% 82.1%
154312 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.56 25.0 3.30e-01 82.9% 74.3%
3929366 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.56 35.0 3.80e-01 70.7% 74.3%
4994455 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 33.0 3.58e-01 80.5% 70.0%
4167784 4.6.1.6 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.55 25.0 3.23e-01 84.6% 72.9%
3300116 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.55 35.0 3.81e-01 78.0% 76.2%
4010681 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.54 30.0 3.39e-01 86.2% 70.5%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 29.0 3.35e-01 85.4% 73.3%
3387994 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.51 29.0 3.44e-01 71.5% 82.5%