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pre3_saliva_scaffold_7_prodigal-single.1__X__X__00429
Bact-Virpre3_saliva_scaffold_7_prodigal-single.1__X__X__00429
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 102-296
Domain cluster:
rep: pre3_saliva_scaffold_7_prodigal-single.1__X__X__00290__D56-216
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01223.30 best | Endonuclease_NS | 50.9 | 2.20e-13 | 96.9% | 63.2% |
| PF13930.13 | Endonuclea_NS_2 | 81.8 | 7.30e-23 | 76.4% | 90.1% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3owvB00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.86 | 83.0 | 7.87e-01 | 100.0% | 92.4% |
| 2xgrA00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.80 | 70.0 | 6.99e-01 | 89.2% | 91.4% |
| 4a1nA01 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.77 | 59.0 | 5.44e-01 | 77.9% | 74.6% |
| 1zm8A00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.77 | 62.0 | 5.71e-01 | 82.1% | 81.6% |
| 5inhA04 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.74 | 59.0 | 5.07e-01 | 82.1% | 70.6% |
| 2e1qC05 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.56 | 22.0 | 2.84e-01 | 98.5% | 58.5% |
| 3lbeB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 32.0 | 3.88e-01 | 82.6% | 87.1% |
| 2fs2B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 31.0 | 3.66e-01 | 82.6% | 78.3% |
| 4k02A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 33.0 | 3.98e-01 | 83.1% | 92.9% |
| 2ov9C01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 31.0 | 3.47e-01 | 83.1% | 74.8% |
| 3dkzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 30.0 | 3.67e-01 | 82.6% | 87.2% |
| 2f3xA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 31.0 | 3.55e-01 | 82.6% | 77.6% |
| 1q4tA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 31.0 | 3.55e-01 | 82.6% | 78.9% |
| 1lshA03 | 2.20.50.20 | Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 | 0.52 | 25.0 | 3.43e-01 | 77.9% | 90.8% |
| 2gvhC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 29.0 | 3.43e-01 | 75.4% | 78.7% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 29.0 | 3.08e-01 | 90.3% | 61.2% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 30.0 | 3.66e-01 | 82.6% | 93.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589217 | 378.1.1.11 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclea_NS_2 | 0.89 | 84.0 | 8.57e-01 | 98.5% | 98.9% |
| 408607 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.86 | 83.0 | 7.87e-01 | 100.0% | 92.4% |
| 1807481 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.84 | 74.0 | 6.96e-01 | 90.3% | 99.6% |
| 8232 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.77 | 62.0 | 5.68e-01 | 82.1% | 81.2% |
| 3411641 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.76 | 59.0 | 5.32e-01 | 79.5% | 74.9% |
| 3969210 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.75 | 63.0 | 5.47e-01 | 87.7% | 71.6% |
| 3622236 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 59.0 | 5.16e-01 | 82.1% | 67.5% |
| 3889557 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.74 | 58.0 | 5.71e-01 | 81.0% | 89.9% |
| 2374 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.57 | 23.0 | 3.66e-01 | 79.5% | 100.0% |
| 1735008 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.54 | 28.0 | 3.78e-01 | 74.9% | 96.9% |
| 4012208 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.54 | 35.0 | 3.91e-01 | 83.1% | 83.3% |
| 4288691 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.53 | 31.0 | 3.68e-01 | 82.6% | 82.8% |
| 3792314 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.50 | 30.0 | 3.56e-01 | 83.6% | 84.4% |