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pre4_saliva_scaffold_3_prodigal-single.1__X__X__00007
Bact-Virpre4_saliva_scaffold_3_prodigal-single.1__X__X__00007
Identity
- Kingdom:
- phage
Quality
59.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 420-521
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.72 | 57.0 | 6.02e-01 | 100.0% | 96.6% |
| 2wanA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 50.0 | 5.08e-01 | 96.1% | 75.7% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.66 | 49.0 | 4.88e-01 | 100.0% | 75.5% |
| 1kqrA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 44.0 | 3.83e-01 | 100.0% | 47.5% |
| 6u7jA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 36.0 | 3.79e-01 | 90.2% | 64.0% |
| 6evgA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.57 | 45.0 | 4.20e-01 | 86.3% | 75.8% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 32.0 | 3.58e-01 | 73.5% | 71.4% |
| 3njfA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.56 | 41.0 | 4.01e-01 | 75.5% | 98.2% |
| 4ccdA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 47.0 | 3.61e-01 | 98.0% | 92.4% |
| 7esdB01 | 2.60.40.350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 36.0 | 3.74e-01 | 90.2% | 73.9% |
| 2zyzC00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.53 | 34.0 | 3.54e-01 | 72.5% | 68.8% |
| 1t7vA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.71e-01 | 90.2% | 76.7% |
| 5lvxC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 38.0 | 3.76e-01 | 85.3% | 73.1% |
| 3omzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 39.0 | 3.91e-01 | 91.2% | 82.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3289663 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.65 | 58.0 | 4.63e-01 | 100.0% | 68.2% |
| 4394964 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.64 | 57.0 | 4.33e-01 | 100.0% | 63.9% |
| 3982197 | 207.2.1.25 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › AIDA | 0.62 | 52.0 | 3.47e-01 | 99.0% | 22.8% |
| 5083578 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.61 | 37.0 | 3.88e-01 | 90.2% | 64.2% |
| 5044383 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.53 | 42.0 | 3.55e-01 | 88.2% | 88.1% |
| 3548841 | 2008.6.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central | 0.52 | 47.0 | 3.43e-01 | 100.0% | 47.7% |
D2
medium
residues 27-154