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pre4_saliva_scaffold_3_prodigal-single.1__X__X__00032
Bact-Virpre4_saliva_scaffold_3_prodigal-single.1__X__X__00032
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-85
Domain cluster:
rep: SRR1747065_scaffold_38_prodigal-single.1__X__X__00179__D3-78
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 48.0 | 4.87e-01 | 90.4% | 83.1% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 49.0 | 3.82e-01 | 92.8% | 83.8% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 42.0 | 4.31e-01 | 75.9% | 87.5% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.57 | 48.0 | 4.71e-01 | 95.2% | 84.9% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.57 | 43.0 | 4.49e-01 | 94.0% | 89.6% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.56 | 41.0 | 2.77e-01 | 77.1% | 43.2% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 44.0 | 4.59e-01 | 95.2% | 97.3% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 4.15e-01 | 86.7% | 92.3% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 46.0 | 3.75e-01 | 92.8% | 84.7% |
| 2cg7A02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.55 | 28.0 | 3.41e-01 | 86.7% | 84.1% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.55 | 42.0 | 4.03e-01 | 100.0% | 71.2% |
| 4l1nA00 | 2.40.128.660 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 | 0.54 | 39.0 | 3.16e-01 | 75.9% | 83.9% |
| 2v5oA03 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.54 | 38.0 | 3.29e-01 | 73.5% | 97.1% |
| 2x5cA01 | 3.30.70.3590 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 45.0 | 4.44e-01 | 100.0% | 87.9% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 44.0 | 3.71e-01 | 91.6% | 95.8% |
| 2tbvA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 2.98e-01 | 89.2% | 87.4% |
| 2g9gA00 | 2.60.120.1020 | Mainly Beta › Sandwich › Jelly Rolls › PAW domain | 0.53 | 36.0 | 2.79e-01 | 71.1% | 66.7% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 38.0 | 3.97e-01 | 88.0% | 85.3% |
| 2re7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 43.0 | 3.74e-01 | 91.6% | 97.0% |
| 6hrgA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.52 | 39.0 | 2.85e-01 | 79.5% | 100.0% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 42.0 | 3.65e-01 | 90.4% | 89.6% |
| 2ol5A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 45.0 | 3.53e-01 | 98.8% | 95.6% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 31.0 | 2.81e-01 | 97.6% | 42.6% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 41.0 | 3.49e-01 | 88.0% | 87.3% |
| 2asfA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 41.0 | 3.63e-01 | 89.2% | 95.2% |
| 1in0A02 | 3.30.70.990 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YajQ-like, domain 2 | 0.51 | 41.0 | 4.02e-01 | 86.7% | 100.0% |
| 2v5oA05 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.51 | 39.0 | 3.41e-01 | 86.7% | 84.3% |
| 3obyA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.50 | 40.0 | 3.80e-01 | 100.0% | 71.6% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3786412 | 4.1.1.344 ↗ | beta barrels › SH3 › SH3 › SH3 › PF31193 | 0.63 | 50.0 | 5.14e-01 | 85.5% | 95.0% |
| 4622062 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 55.0 | 3.94e-01 | 100.0% | 57.0% |
| 4931113 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.60 | 51.0 | 4.66e-01 | 100.0% | 70.0% |
| 4581369 | 4.1.1.166 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2314 | 0.60 | 54.0 | 5.00e-01 | 100.0% | 88.6% |
| 4004815 | 4.1.1.166 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2314 | 0.60 | 53.0 | 4.65e-01 | 98.8% | 66.7% |
| 3389662 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.59 | 45.0 | 4.59e-01 | 91.6% | 83.7% |
| 3698096 | 219.1.1.115 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C | 0.59 | 47.0 | 3.75e-01 | 89.2% | 93.3% |
| 5061051 | 4252.1.1.12 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 | 0.58 | 48.0 | 3.77e-01 | 92.8% | 97.3% |
| 4422325 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 49.0 | 4.81e-01 | 92.8% | 95.5% |
| 3786396 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.58 | 50.0 | 4.33e-01 | 97.6% | 63.8% |
| 3459220 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.57 | 44.0 | 2.98e-01 | 83.1% | 46.2% |
| 3743378 | 4252.1.1.5 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › Svf1 | 0.57 | 42.0 | 3.46e-01 | 79.5% | 95.2% |
| 4555816 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 45.0 | 4.51e-01 | 94.0% | 83.5% |
| 5070306 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 49.0 | 4.67e-01 | 96.4% | 96.0% |
| 4220126 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.57 | 45.0 | 4.47e-01 | 95.2% | 83.5% |
| 5048425 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.29e-01 | 78.3% | 100.0% |
| 3721787 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 48.0 | 4.83e-01 | 96.4% | 94.1% |
| 4028738 | 5.1.4.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel | 0.56 | 41.0 | 2.70e-01 | 77.1% | 26.9% |
| 3761319 | 4.1.1.253 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4537 | 0.55 | 40.0 | 4.42e-01 | 84.3% | 100.0% |
| 4466506 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 44.0 | 4.62e-01 | 94.0% | 96.0% |
| 4028997 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 40.0 | 3.98e-01 | 78.3% | 87.8% |
| 3503502 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.53 | 40.0 | 3.49e-01 | 81.9% | 96.2% |
| 3874219 | 5.1.4.224 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 | 0.53 | 44.0 | 2.92e-01 | 92.8% | 23.7% |
| 3712672 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 40.0 | 4.11e-01 | 84.3% | 100.0% |
| 165926 | 1.1.5.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like | 0.52 | 43.0 | 3.74e-01 | 91.6% | 97.0% |
| 4514555 | 1.1.5.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 | 0.52 | 45.0 | 3.47e-01 | 97.6% | 94.9% |
| 3691594 | 1.1.5.36 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like | 0.52 | 42.0 | 3.32e-01 | 90.4% | 73.0% |
| 3983642 | 220.1.1.73 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3461 | 0.52 | 36.0 | 3.59e-01 | 73.5% | 93.3% |
| 5018908 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.52 | 42.0 | 3.64e-01 | 91.6% | 90.4% |
| 5044599 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.51 | 42.0 | 2.48e-01 | 90.4% | 47.0% |
| 3923116 | 517.1.1.1 ↗ | beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta | 0.51 | 39.0 | 3.46e-01 | 86.7% | 53.8% |
| 4026222 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 42.0 | 3.54e-01 | 91.6% | 80.0% |
| 3921654 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.51 | 41.0 | 3.48e-01 | 85.5% | 92.5% |
| 3873544 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.51 | 41.0 | 3.50e-01 | 86.7% | 91.0% |
| 4030216 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 40.0 | 2.73e-01 | 85.5% | 27.4% |
| 4235772 | 243.3.1.11 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Staphopain_pro | 0.51 | 43.0 | 3.45e-01 | 94.0% | 97.6% |
| 3237030 | 2.1.1.89 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis3l2_C_term | 0.50 | 42.0 | 3.75e-01 | 90.4% | 67.8% |
| 3412152 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.50 | 41.0 | 3.48e-01 | 88.0% | 91.1% |
| 3199626 | 2002.1.1.56 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus | 0.50 | 35.0 | 2.27e-01 | 73.5% | 50.0% |
D2
medium
residues 98-162
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.75 | 60.0 | 5.40e-01 | 87.7% | 64.4% |
| 2f2bA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.70 | 51.0 | 3.41e-01 | 76.9% | 96.3% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.64 | 46.0 | 4.03e-01 | 76.9% | 78.2% |