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pre4_saliva_scaffold_3_prodigal-single.1__X__X__00072

Bact-Vir

pre4_saliva_scaffold_3_prodigal-single.1__X__X__00072

Identity

Kingdom:
phage

Quality

82.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-92
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.77 58.0 6.35e-01 100.0% 98.0%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.76 57.0 6.19e-01 100.0% 98.0%
4bpnW02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.75 57.0 6.17e-01 100.0% 98.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 65.0 5.34e-01 100.0% 83.6%
1iyjB04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 64.0 4.91e-01 100.0% 52.9%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 64.0 5.17e-01 100.0% 62.1%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 63.0 5.55e-01 100.0% 88.9%
1ixrA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 60.0 6.02e-01 96.8% 92.1%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 55.0 5.19e-01 100.0% 71.8%
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 55.0 5.65e-01 100.0% 93.1%
6rjiA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 50.0 5.41e-01 100.0% 94.2%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.67 52.0 5.33e-01 98.4% 89.7%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 59.0 5.11e-01 100.0% 79.4%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 53.0 5.34e-01 100.0% 86.9%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 41.0 3.98e-01 77.4% 60.3%
3u50C01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 51.0 4.17e-01 100.0% 77.2%
2cnxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 39.0 2.48e-01 93.5% 13.4%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.60 53.0 4.79e-01 100.0% 77.4%
4e4fA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 50.0 3.89e-01 96.8% 67.4%
4oonA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 53.0 4.43e-01 100.0% 70.2%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 49.0 4.71e-01 100.0% 82.4%
4b43A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 53.0 4.26e-01 100.0% 77.4%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 39.0 2.43e-01 71.0% 56.5%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 52.0 4.29e-01 100.0% 93.5%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 51.0 4.37e-01 100.0% 93.0%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 49.0 4.72e-01 100.0% 93.2%
2k52A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 52.0 4.87e-01 100.0% 87.8%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 45.0 3.56e-01 91.9% 83.9%
2je6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 4.34e-01 100.0% 84.1%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 48.0 4.24e-01 100.0% 76.8%
1smxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 4.27e-01 100.0% 93.1%
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 46.0 4.24e-01 100.0% 82.8%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 42.0 4.15e-01 100.0% 85.1%
2kcmA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 4.28e-01 100.0% 87.8%
3bzcA05 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.98e-01 100.0% 70.8%
1ah9A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 46.0 4.47e-01 100.0% 88.7%
1jt8A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 3.77e-01 100.0% 58.8%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.52 44.0 3.75e-01 100.0% 56.5%
2rf4E02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 43.0 4.06e-01 100.0% 98.8%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 47.0 3.98e-01 100.0% 90.1%
4c3iG02 2.40.50.1060 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 43.0 3.46e-01 100.0% 57.6%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4043931 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.79 63.0 6.47e-01 100.0% 88.3%
4033610 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.75 59.0 4.87e-01 85.5% 80.0%
4036335 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.75 59.0 4.92e-01 87.1% 80.9%
2579116 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.74 59.0 5.92e-01 100.0% 85.5%
3230020 2.1.1.235 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26704 0.73 64.0 6.22e-01 100.0% 91.4%
3215092 2.1.1.235 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26704 0.72 63.0 5.82e-01 100.0% 82.5%
4933970 2.1.1.9 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.72 59.0 6.01e-01 100.0% 91.7%
3213993 2.1.1.235 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26704 0.71 62.0 5.75e-01 100.0% 77.5%
3244265 2.1.1.317 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272, PF26704 0.71 62.0 4.68e-01 100.0% 40.7%
4347147 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.71 63.0 5.80e-01 100.0% 85.0%
4204456 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 63.0 5.79e-01 100.0% 90.0%
3222223 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 61.0 6.10e-01 100.0% 96.9%
3712657 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.70 54.0 4.20e-01 85.5% 57.9%
4262785 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 63.0 5.80e-01 100.0% 87.5%
4129194 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 63.0 5.76e-01 100.0% 90.0%
3517758 2.1.1.106 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PRS7_OB 0.69 60.0 5.46e-01 100.0% 72.5%
3781083 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.69 39.0 2.26e-01 82.3% 6.9%
4396747 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.69 61.0 5.66e-01 100.0% 86.3%
5058787 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.69 62.0 5.11e-01 100.0% 64.5%
4105153 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.69 62.0 5.56e-01 100.0% 83.5%
4141240 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.69 62.0 5.69e-01 100.0% 85.0%
5044484 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.69 58.0 5.17e-01 98.4% 76.3%
4183023 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.68 61.0 5.63e-01 100.0% 87.5%
4642492 2.1.1.118 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TEBP_OB2-like 0.68 62.0 5.14e-01 100.0% 64.8%
4245059 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.68 62.0 5.54e-01 100.0% 83.5%
4272096 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.68 61.0 5.36e-01 100.0% 86.7%
4288723 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.68 61.0 5.71e-01 100.0% 89.3%
4425417 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.68 61.0 5.59e-01 100.0% 88.7%
4194126 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.68 61.0 5.59e-01 100.0% 86.3%
4070256 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.68 61.0 5.58e-01 100.0% 88.7%
4215942 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.68 61.0 5.46e-01 100.0% 85.9%
3268408 2.1.1.106 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PRS7_OB 0.67 58.0 4.44e-01 100.0% 43.0%
4221404 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.67 60.0 5.50e-01 100.0% 86.3%
4952176 2.18.1.0 beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins 0.67 58.0 5.50e-01 100.0% 88.0%
3953289 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.67 60.0 5.37e-01 100.0% 81.2%
4526294 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 55.0 5.43e-01 100.0% 90.8%
4285193 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.67 60.0 5.49e-01 100.0% 91.3%
4061669 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.67 60.0 5.48e-01 100.0% 86.3%
4341488 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.66 60.0 5.61e-01 100.0% 94.7%
3987614 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.66 59.0 5.41e-01 100.0% 86.3%
3711866 2.1.1.106 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PRS7_OB 0.66 58.0 4.85e-01 100.0% 57.1%
5023761 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 53.0 5.16e-01 98.4% 82.9%
3717694 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.63 39.0 4.45e-01 93.5% 86.7%
4950307 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 54.0 5.02e-01 100.0% 82.5%
3973363 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 51.0 4.90e-01 100.0% 78.7%
4943610 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 54.0 4.35e-01 100.0% 95.3%
4030766 2.1.1.38 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RNB 0.63 52.0 4.89e-01 100.0% 76.2%
3584495 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 53.0 4.96e-01 100.0% 83.7%
3227103 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 51.0 4.79e-01 100.0% 81.2%
3995469 2.18.1.3 beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins › OB_DEPS-1_2nd 0.60 51.0 4.66e-01 100.0% 71.8%
3252939 2.1.1.37 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.60 47.0 4.67e-01 100.0% 84.6%
4024439 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.59 49.0 4.78e-01 100.0% 85.7%
3227987 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 48.0 4.64e-01 98.4% 82.7%
3244962 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 4.72e-01 100.0% 82.7%
4653384 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.58 46.0 4.72e-01 98.4% 95.0%
3938425 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 48.0 4.32e-01 100.0% 65.3%
3839910 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.58 48.0 4.80e-01 100.0% 96.8%
3613173 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 49.0 4.23e-01 100.0% 60.0%
3403109 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 48.0 4.19e-01 100.0% 74.3%
4942400 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 48.0 3.95e-01 100.0% 65.6%
4938098 2.1.1.109 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.58 49.0 4.53e-01 100.0% 88.2%
4376165 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.57 46.0 4.69e-01 100.0% 95.0%
24072 2.1.1.109 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.57 49.0 4.43e-01 100.0% 85.2%
4097689 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 4.62e-01 98.4% 87.1%
3930530 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 4.17e-01 100.0% 65.6%
3998577 2.1.1.253 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29478 0.57 48.0 4.76e-01 98.4% 92.3%
3938105 2.1.1.253 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29478 0.56 46.0 4.50e-01 100.0% 84.3%
4677730 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.56 46.0 4.57e-01 100.0% 92.2%
4437479 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 47.0 4.57e-01 100.0% 90.0%
4100241 2.1.1.113 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CvfB_2nd 0.56 45.0 4.18e-01 100.0% 69.4%
3597594 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 45.0 3.55e-01 100.0% 67.3%
3738532 2.1.1.21 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.54 45.0 4.16e-01 100.0% 72.9%
4582532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 45.0 4.21e-01 98.4% 78.8%
4944767 101.1.2.883 alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.50 44.0 4.13e-01 96.8% 90.7%