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pre4_saliva_scaffold_3_prodigal-single.1__X__X__00126
Bact-Virpre4_saliva_scaffold_3_prodigal-single.1__X__X__00126
Identity
- Kingdom:
- phage
Quality
93.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-50
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a90A02 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.71 | 46.0 | 4.30e-01 | 73.5% | 54.1% |
| 3vpbB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.67 | 60.0 | 4.55e-01 | 100.0% | 69.6% |
| 2g43B01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 58.0 | 4.64e-01 | 100.0% | 55.1% |
| 2cspA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 53.0 | 4.35e-01 | 100.0% | 55.1% |
| 2i87B02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.63 | 56.0 | 3.85e-01 | 100.0% | 49.7% |
| 2yweA03 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.61 | 49.0 | 4.18e-01 | 89.8% | 89.0% |
| 3l50A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.61 | 50.0 | 3.80e-01 | 100.0% | 46.3% |
| 1x4rA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.61 | 43.0 | 3.79e-01 | 77.6% | 81.0% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 50.0 | 4.15e-01 | 100.0% | 77.3% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 48.0 | 3.65e-01 | 100.0% | 47.2% |
| 2xhkB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 47.0 | 3.55e-01 | 91.8% | 35.0% |
| 3pc3A03 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.59 | 44.0 | 3.37e-01 | 89.8% | 31.9% |
| 6cngA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.59 | 46.0 | 3.51e-01 | 89.8% | 75.8% |
| 4gs5A01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.58 | 46.0 | 2.97e-01 | 89.8% | 50.4% |
| 1xttB00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 41.0 | 2.78e-01 | 77.6% | 64.9% |
| 3pl5A03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.58 | 50.0 | 3.81e-01 | 100.0% | 72.7% |
| 1o97C00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.57 | 43.0 | 2.83e-01 | 87.8% | 77.7% |
| 3gasB02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 45.0 | 3.30e-01 | 100.0% | 43.5% |
| 6pxcA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 43.0 | 3.55e-01 | 89.8% | 46.2% |
| 2hxsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 41.0 | 2.94e-01 | 85.7% | 79.8% |
| 2w0mA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 44.0 | 3.00e-01 | 93.9% | 50.9% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.56 | 38.0 | 2.72e-01 | 73.5% | 64.2% |
| 3hfqA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 50.0 | 2.97e-01 | 98.0% | 23.8% |
| 1a79A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 44.0 | 3.72e-01 | 98.0% | 85.0% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.56 | 35.0 | 3.39e-01 | 100.0% | 51.7% |
| 2v79A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 2.99e-01 | 73.5% | 54.8% |
| 1r0vA01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.56 | 44.0 | 3.97e-01 | 98.0% | 85.7% |
| 4wiqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 49.0 | 3.81e-01 | 100.0% | 56.6% |
| 3pfsB00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 41.0 | 3.15e-01 | 85.7% | 64.6% |
| 4lubB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 47.0 | 3.83e-01 | 100.0% | 88.0% |
| 4dddA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 45.0 | 3.43e-01 | 100.0% | 89.1% |
| 4nzrM01 | 3.30.1370.200 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.54 | 40.0 | 3.46e-01 | 81.6% | 94.0% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.43e-01 | 83.7% | 56.2% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 42.0 | 3.83e-01 | 100.0% | 96.2% |
| 1s7jA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 44.0 | 3.39e-01 | 100.0% | 47.7% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.25e-01 | 81.6% | 50.5% |
| 2mp4A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 40.0 | 2.99e-01 | 89.8% | 46.1% |
| 3rbyA02 | 2.40.128.310 | Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain | 0.52 | 38.0 | 3.20e-01 | 83.7% | 47.4% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 3.02e-01 | 77.6% | 68.6% |
| 2eshA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 36.0 | 2.91e-01 | 77.6% | 48.2% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.51 | 40.0 | 3.24e-01 | 89.8% | 46.6% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.51 | 32.0 | 2.73e-01 | 73.5% | 32.6% |
| 1ri6A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 42.0 | 2.62e-01 | 100.0% | 24.6% |
| 3gkuA03 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.51 | 36.0 | 3.30e-01 | 77.6% | 63.4% |
| 3qf7A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 2.66e-01 | 95.9% | 24.1% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 34.0 | 2.59e-01 | 73.5% | 36.5% |
| 1bd3A00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 37.0 | 2.55e-01 | 87.8% | 21.0% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3306435 | 245.3.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Colicin S4 receptor-binding domain › Colicin S4 receptor-binding domain › BRX | 0.73 | 43.0 | 4.17e-01 | 98.0% | 51.9% |
| 5079089 | 304.48.1.31 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Cas10-Cmr2_palm2 | 0.72 | 61.0 | 4.14e-01 | 100.0% | 87.2% |
| 3335040 | 5.1.3.129 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BRX | 0.72 | 43.0 | 4.18e-01 | 100.0% | 52.7% |
| 5046855 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.70 | 63.0 | 4.08e-01 | 100.0% | 36.9% |
| 5036063 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.68 | 61.0 | 4.08e-01 | 100.0% | 44.4% |
| 4946939 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.66 | 54.0 | 3.70e-01 | 100.0% | 86.5% |
| 3324359 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.65 | 54.0 | 5.06e-01 | 93.9% | 76.7% |
| 3927505 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.64 | 51.0 | 4.50e-01 | 93.9% | 96.2% |
| 3264726 | 376.1.1.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var | 0.64 | 49.0 | 3.99e-01 | 100.0% | 40.9% |
| 4953670 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.64 | 48.0 | 3.73e-01 | 89.8% | 36.2% |
| 3893791 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 39.0 | 3.13e-01 | 75.5% | 29.5% |
| 4304329 | 376.1.1.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var | 0.61 | 50.0 | 3.97e-01 | 100.0% | 41.9% |
| 3995616 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.61 | 45.0 | 2.91e-01 | 81.6% | 26.1% |
| 3614367 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.61 | 48.0 | 3.30e-01 | 93.9% | 56.9% |
| 3641260 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.60 | 47.0 | 3.59e-01 | 93.9% | 86.7% |
| 4312097 | 295.1.1.15 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 | 0.60 | 47.0 | 3.19e-01 | 85.7% | 29.1% |
| 3502505 | 7525.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 | 0.59 | 42.0 | 2.68e-01 | 73.5% | 30.0% |
| 4108962 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.59 | 51.0 | 2.98e-01 | 93.9% | 22.4% |
| 4126423 | 304.102.1.6 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 | 0.59 | 45.0 | 3.07e-01 | 89.8% | 56.3% |
| 5077402 | 2007.15.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase | 0.59 | 41.0 | 2.88e-01 | 77.6% | 37.3% |
| 3608238 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.57 | 43.0 | 3.79e-01 | 100.0% | 53.0% |
| 3306198 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.57 | 48.0 | 2.87e-01 | 93.9% | 17.5% |
| 3465836 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 3.36e-01 | 79.6% | 73.0% |
| 4032134 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.57 | 43.0 | 3.22e-01 | 98.0% | 45.3% |
| 5027764 | 152.1.1.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 | 0.57 | 36.0 | 3.17e-01 | 100.0% | 42.7% |
| 1539 | 11.1.1.862 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_RIMBP2 | 0.57 | 45.0 | 3.63e-01 | 100.0% | 45.3% |
| 3551796 | 220.1.1.118 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › RHG20_PH | 0.56 | 45.0 | 3.41e-01 | 89.8% | 38.3% |
| 3925831 | 11.1.1.857 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7584 | 0.56 | 47.0 | 3.68e-01 | 100.0% | 49.6% |
| 4352871 | 601.7.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C | 0.55 | 42.0 | 2.42e-01 | 87.8% | 34.0% |
| 3228509 | 101.1.4.12 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC | 0.55 | 38.0 | 2.85e-01 | 73.5% | 53.3% |
| 3284651 | 10.12.1.29 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CDO_I | 0.55 | 48.0 | 3.32e-01 | 100.0% | 60.6% |
| 4014690 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.55 | 42.0 | 2.75e-01 | 87.8% | 40.0% |
| 3723153 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.54 | 42.0 | 2.58e-01 | 98.0% | 45.1% |
| 3669342 | 387.1.5.1 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Gamma-thionin | 0.54 | 43.0 | 4.10e-01 | 95.9% | 75.0% |
| 4976645 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.54 | 42.0 | 3.34e-01 | 100.0% | 46.1% |
| 5060332 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.53 | 44.0 | 3.38e-01 | 100.0% | 68.5% |
| 3916901 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.53 | 41.0 | 3.63e-01 | 100.0% | 91.1% |
| 3508428 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 38.0 | 2.80e-01 | 85.7% | 23.9% |
| 3261801 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.53 | 43.0 | 2.79e-01 | 95.9% | 78.8% |
| 4011414 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 44.0 | 2.93e-01 | 95.9% | 60.9% |
| 4034385 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 42.0 | 3.43e-01 | 100.0% | 57.3% |
| 3895974 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.52 | 38.0 | 2.92e-01 | 85.7% | 60.0% |
| 4222853 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.52 | 42.0 | 3.37e-01 | 100.0% | 58.3% |
| 3207118 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 42.0 | 2.51e-01 | 98.0% | 23.9% |
| 3249789 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.20e-01 | 100.0% | 69.2% |
| 4944834 | 3625.1.1.0 ↗ | alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain | 0.51 | 37.0 | 3.00e-01 | 79.6% | 89.1% |
| 3468758 | 221.1.1.52 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 | 0.50 | 39.0 | 3.26e-01 | 95.9% | 73.3% |
| 3731940 | 633.23.1.12 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 | 0.50 | 41.0 | 2.69e-01 | 95.9% | 51.4% |