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pre4_saliva_scaffold_3_prodigal-single.1__X__X__00136
Bact-Virpre4_saliva_scaffold_3_prodigal-single.1__X__X__00136
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-77_188-202
D2
high
residues 82-186
Domain cluster:
rep: MW248466.1__QQM14682.1__CPT_MarsHill_148__00145__D87-185
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.64 | 48.0 | 4.63e-01 | 100.0% | 70.0% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.58 | 31.0 | 4.09e-01 | 74.3% | 94.9% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.57 | 38.0 | 4.11e-01 | 86.7% | 83.3% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 32.0 | 3.39e-01 | 85.7% | 61.9% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 32.0 | 3.67e-01 | 81.0% | 82.4% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 33.0 | 3.44e-01 | 83.8% | 65.3% |
| 2ciuA00 | 3.10.450.320 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mitochondrial import inner membrane translocase subunit Tim21 | 0.54 | 36.0 | 3.43e-01 | 75.2% | 57.7% |
| 3h4zB03 | 3.15.10.50 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › | 0.51 | 42.0 | 3.51e-01 | 91.4% | 68.1% |
| 2lpuA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 40.0 | 3.58e-01 | 83.8% | 96.6% |
| 4kc7A02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 32.0 | 3.36e-01 | 84.8% | 67.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940002 | 223.1.1.122 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA | 0.58 | 35.0 | 2.81e-01 | 100.0% | 30.5% |
| 4523830 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.57 | 36.0 | 3.57e-01 | 74.3% | 59.1% |
| 3966018 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.56 | 34.0 | 3.42e-01 | 76.2% | 59.0% |
| 5080415 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.55 | 33.0 | 3.25e-01 | 75.2% | 51.7% |
| 3622767 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.54 | 39.0 | 4.03e-01 | 100.0% | 82.1% |
| 2032855 | 9.28.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C | 0.54 | 33.0 | 3.39e-01 | 84.8% | 62.4% |
| 5006515 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.54 | 33.0 | 3.29e-01 | 77.1% | 55.7% |
| 4997160 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.53 | 32.0 | 3.30e-01 | 76.2% | 62.0% |
| 3408388 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.53 | 32.0 | 3.54e-01 | 80.0% | 77.5% |
| 3630007 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.53 | 37.0 | 3.72e-01 | 98.1% | 70.9% |
| 3255683 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.52 | 32.0 | 3.03e-01 | 73.3% | 46.7% |
| 4430862 | 9.28.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C | 0.51 | 33.0 | 3.32e-01 | 84.8% | 63.8% |
| 3218512 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.51 | 40.0 | 4.01e-01 | 99.0% | 84.8% |