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pre4_saliva_scaffold_3_prodigal-single.1__X__X__00148
Bact-Virpre4_saliva_scaffold_3_prodigal-single.1__X__X__00148
Identity
- Kingdom:
- phage
Quality
73.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 304-431_549-587
Domain cluster:
rep: pig_ID_3158_F95_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00099__D319-438_561-598
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dfuP00 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.55 | 23.0 | 2.87e-01 | 99.4% | 59.6% |
| 3ir9A02 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.50 | 26.0 | 2.96e-01 | 88.6% | 65.0% |
D2
medium
residues 66-134
D3
medium
residues 434-548
Domain cluster:
rep: SRR1747021_scaffold_4_curated_closed_complete_prodigal-single.1__X__X__00039__D508-611
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.64 | 34.0 | 3.65e-01 | 98.3% | 58.6% |
| 3mswA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 29.0 | 2.80e-01 | 73.9% | 42.4% |
| 2i5bA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 42.0 | 3.21e-01 | 87.8% | 93.3% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 41.0 | 3.07e-01 | 87.8% | 82.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3899940 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.66 | 31.0 | 3.67e-01 | 100.0% | 62.5% |
| 3212817 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.55 | 35.0 | 3.25e-01 | 100.0% | 48.7% |
| 3984313 | 3227.1.1.0 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC | 0.54 | 41.0 | 2.94e-01 | 80.9% | 81.2% |
| 1153941 | 243.4.1.2 ↗ | a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like › DsbG_N | 0.52 | 34.0 | 3.62e-01 | 100.0% | 77.1% |
| 5061259 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.51 | 35.0 | 3.76e-01 | 70.4% | 100.0% |
| 4982298 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.51 | 35.0 | 3.59e-01 | 70.4% | 92.7% |
| 3728641 | 3327.1.1.1 ↗ | alpha bundles › HET-S N-terminal domain › HET-S N-terminal domain › HET-S N-terminal domain › HeLo | 0.50 | 42.0 | 3.41e-01 | 91.3% | 80.9% |