←Back to structures
pre4_saliva_scaffold_3_prodigal-single.1__X__X__00150
Bact-Virpre4_saliva_scaffold_3_prodigal-single.1__X__X__00150
Identity
- Kingdom:
- phage
Quality
56.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 482-605
D2
high
residues 771-857
D3
high
residues 867-1002
D4
high
residues 1019-1111
Domain cluster:
rep: term2_saliva_scaffold_0_prodigal-single.1__X__X__00232__D580-672
D5
medium
residues 7-94
D6
medium
residues 99-186
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxg01 | 6.20.370.70 | Special › Other non-globular › Rhinovirus 14, subunit 4 › | 0.64 | 27.0 | 3.90e-01 | 93.2% | 91.9% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.63 | 44.0 | 3.84e-01 | 73.9% | 52.1% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.62 | 23.0 | 3.06e-01 | 94.3% | 58.0% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.56 | 25.0 | 3.03e-01 | 80.7% | 63.2% |
| 4gi3C00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.55 | 31.0 | 3.73e-01 | 73.9% | 86.0% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.54 | 34.0 | 3.99e-01 | 90.9% | 90.3% |
| 1ilvA00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.53 | 40.0 | 3.01e-01 | 83.0% | 91.0% |
| 3ty2A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.51 | 38.0 | 2.88e-01 | 81.8% | 88.8% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 29.0 | 2.96e-01 | 100.0% | 56.3% |
| 6w1kA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.50 | 41.0 | 2.92e-01 | 92.0% | 82.8% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3530175 | 2485.1.1.40 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N_3 | 0.63 | 44.0 | 4.03e-01 | 89.8% | 54.2% |
| 3615637 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 43.0 | 3.35e-01 | 77.3% | 51.0% |
| 3565275 | 2008.1.1.94 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF5614 | 0.60 | 44.0 | 3.38e-01 | 78.4% | 51.2% |
| 5027317 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.58 | 45.0 | 3.60e-01 | 79.5% | 83.6% |
| 4499424 | 812.1.1.1 ↗ | a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE | 0.58 | 35.0 | 3.84e-01 | 89.8% | 74.3% |
| 4381821 | 314.1.1.11 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta | 0.56 | 43.0 | 3.29e-01 | 83.0% | 94.8% |
D7
medium
residues 417-473