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pre4_saliva_scaffold_3_prodigal-single.1__X__X__00193
Bact-Virpre4_saliva_scaffold_3_prodigal-single.1__X__X__00193
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-192
Domain cluster:
rep: pre3_saliva_scaffold_3_prodigal-single.1__X__X__00137__D2-176
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5t3uB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.61 | 36.0 | 4.17e-01 | 85.3% | 81.2% |
| 2qaiB00 | 3.40.50.10580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ATPase, V1 complex, subunit F | 0.61 | 27.0 | 3.69e-01 | 78.9% | 82.4% |
| 2kpoA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 32.0 | 4.04e-01 | 85.3% | 89.1% |
| 1gkuB05 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 33.0 | 3.92e-01 | 83.2% | 92.6% |
| 4o5aA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 33.0 | 3.87e-01 | 85.8% | 87.9% |
| 2kjqA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 31.0 | 3.67e-01 | 80.5% | 88.9% |
| 1t6cA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 31.0 | 3.64e-01 | 82.1% | 88.0% |
| 2hnhA01 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 39.0 | 3.51e-01 | 81.1% | 94.8% |
| 1bmtA02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.50 | 33.0 | 3.60e-01 | 85.8% | 78.5% |
| 3kksB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 26.0 | 2.87e-01 | 82.1% | 57.9% |
| 4em8A00 | 3.40.1400.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribose 5-phosphate Isomerase B; Chain: A, › Sugar-phosphate isomerase, RpiB/LacA/LacB | 0.50 | 36.0 | 4.01e-01 | 89.5% | 94.5% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3232092 | 2007.2.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase | 0.61 | 36.0 | 4.36e-01 | 79.5% | 88.8% |
| 5003310 | 7550.1.1.4 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF488 | 0.59 | 41.0 | 4.77e-01 | 79.5% | 99.3% |
| 4935532 | 7550.1.1.4 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › DUF488 | 0.58 | 39.0 | 4.63e-01 | 81.6% | 99.2% |
| 5074896 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.56 | 39.0 | 3.81e-01 | 84.7% | 65.9% |
| 4009368 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.55 | 40.0 | 3.89e-01 | 84.7% | 66.2% |
| 4064123 | 7572.1.1.2 ↗ | a/b three-layered sandwiches › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › Phosphofructokinase C-terminal domain › PapZ_C | 0.54 | 34.0 | 4.02e-01 | 78.4% | 90.8% |
| 5018591 | 2007.2.3.15 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DUF488 | 0.54 | 39.0 | 4.18e-01 | 76.8% | 84.2% |
| 4392197 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.54 | 28.0 | 3.66e-01 | 84.2% | 91.0% |
| 3593028 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 38.0 | 4.34e-01 | 80.0% | 95.2% |
| 4972967 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 16.0 | 2.42e-01 | 81.1% | 57.1% |
| 5051259 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.53 | 40.0 | 3.83e-01 | 85.3% | 67.9% |
| 4378058 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.53 | 45.0 | 4.04e-01 | 90.5% | 98.5% |
| 3216924 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.51 | 33.0 | 3.87e-01 | 85.3% | 93.1% |
| 4649159 | 2002.1.1.297 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF30387 | 0.51 | 40.0 | 3.29e-01 | 82.1% | 84.2% |
| 4523893 | 2002.1.1.297 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PF30387 | 0.51 | 39.0 | 3.27e-01 | 82.1% | 79.4% |