←Back to structures
premembrane_protein
Euk-VirLouping_ill_virus
premembrane_protein__NP_740274__Louping_ill_virus__11086
Identity
- Accession:
- NP_740274 ↗
- Protein ID:
- premembrane_protein
- Kingdom:
- euk
Quality
75.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Orthoflavivirus›
Louping_ill_virus
TaxID: 11086
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-81
Domain cluster:
rep: propep__YP_009553725__Kampung_Karu_virus__2045186__D2-68
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01570.23 best | Flavi_propep | 49.4 | 5.10e-13 | 94.7% | 63.6% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c5xC00 | 2.60.260.50 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Flavivirus polyprotein propeptide domain | 0.85 | 79.0 | 7.72e-01 | 100.0% | 96.3% |
| 6y2kA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 34.0 | 4.02e-01 | 94.7% | 88.0% |
| 4amcA01 | 2.30.30.20 | Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain | 0.57 | 30.0 | 3.65e-01 | 73.7% | 82.6% |
| 3kljA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.53 | 33.0 | 3.26e-01 | 77.6% | 57.8% |
| 7nn3B01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 42.0 | 2.83e-01 | 93.4% | 41.2% |
| 6n36A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.50 | 37.0 | 2.63e-01 | 80.3% | 40.4% |
| 5e6sB02 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.50 | 44.0 | 3.58e-01 | 100.0% | 72.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2410038 | 67.1.1.2 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › Flavi_propep | 0.94 | 88.0 | 8.63e-01 | 100.0% | 93.8% |
| 2721993 | 67.1.1.2 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › Flavi_propep | 0.91 | 80.0 | 8.02e-01 | 97.4% | 92.2% |
| 2720279 | 67.1.1.2 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › Flavi_propep | 0.90 | 84.0 | 7.56e-01 | 100.0% | 78.2% |
| 5025112 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.57 | 45.0 | 3.81e-01 | 100.0% | 52.0% |
| 4964155 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.54 | 42.0 | 3.47e-01 | 85.5% | 74.3% |
| 3628520 | 5.1.4.308 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL | 0.51 | 41.0 | 2.38e-01 | 93.4% | 94.6% |
D2
high
residues 115-168
Domain cluster:
rep: PreM_protein__NP_775514__Powassan_virus__11083__D116-166
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01004.25 best | Flavi_M | 27.7 | 2.40e-06 | 100.0% | 67.6% |