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primase_D5

Euk-Vir

BeAn_58058_virus

primase_D5__YP_009329716__BeAn_58058_virus__67082

Identity

Accession:: YP_009329716 ↗
Protein ID:: primase_D5
Kingdom:: euk

Quality

86.6 mean pLDDT

Cluster

View cluster (30 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 243-320

PDB

Domain cluster: rep: NTPase,_DNA_primase__YP_008003627__Mythimna_separata_entomopoxvirus_L__1293572__D258-347

D2 high residues 335-400

PDB

Domain cluster: rep: NTPase_DNA_primase__YP_010085218__Western_grey_kangaroopox_virus__1566307__D355-408

D3 high residues 693-782

PDB

Domain cluster: rep: D5-like_helicase-primase__YP_009162463__Salmon_gill_poxvirus__1680908__D732-817

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03288.23 best	Pox_D5	59.5	4.90e-16	100.0%	91.9%

D4 medium residues 1-65_174-192

PDB

Domain cluster: rep: NTPase_-1-__YP_010377099__Monkeypox_virus__10244__D1-67_173-188_200-221

D5 medium residues 66-173_193-227

PDB

Domain cluster: rep: NTPase_DNA_primase__YP_010085382__Eastern_grey_kangaroopox_virus__2042482__D68-183

D6 medium residues 404-464

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF08706.17 best	D5_N	32.4	1.50e-07	96.7%	29.2%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pvpA02	3.30.470.20	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain	0.58	40.0	3.10e-01	72.1%	74.0%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5035042	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.70	54.0	3.53e-01	96.7%	18.9%
4973289	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.68	54.0	3.57e-01	98.4%	20.4%
3945876	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.68	61.0	3.93e-01	98.4%	25.7%
5029777	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.65	48.0	3.18e-01	88.5%	18.8%
3954608	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.62	53.0	3.50e-01	95.1%	22.3%
5081314	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.61	51.0	3.34e-01	93.4%	21.5%
5022020	2004.1.1.409 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF5906	0.60	49.0	3.20e-01	90.2%	21.5%
3717150	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.55	47.0	3.13e-01	100.0%	58.6%

D7 medium residues 465-506_612-692

PDB

Domain cluster: rep: 83R_protein__NP_073468__Yaba-like_disease_virus__132475__D458-493_513-527_623-694

D8 medium residues 507-611

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764