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processing_and_transport_protein

Euk-Vir

Eptesicus_fuscus_gammaherpesvirus

processing_and_transport_protein__YP_009552474__Eptesicus_fuscus_gammaherpesvirus__2035399

Identity

Accession:: YP_009552474 ↗
Protein ID:: processing_and_transport_protein
Kingdom:: euk

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Eptesicus_fuscus_gammaherpesvirus

TaxID: 2035399

Cluster

View cluster (77 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-114

PDB

Domain cluster: rep: transport_protein__YP_004207847__Cricetid_gammaherpesvirus_2__1605972__D1-97

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	74.3	8.50e-21	99.1%	16.6%

D2 medium residues 115-205

PDB

Domain cluster: rep: DNA_packaging_terminase_subunit_2__YP_007969816__Elephantid_betaherpesvirus_1__146015__D118-183_479-495

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	106.6	1.40e-30	100.0%	13.7%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3go2A01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.57	40.0	3.73e-01	72.5%	87.7%
4f5cA04	1.25.50.20	Mainly Alpha › Alpha Horseshoe › Zincin-like fold ›	0.57	43.0	3.00e-01	83.5%	95.2%
1bqgA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.55	37.0	3.28e-01	70.3%	77.5%
4v19W00	3.90.470.10	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17	0.55	42.0	3.47e-01	82.4%	78.9%
4jn7A01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.54	38.0	3.55e-01	73.6%	85.7%
2kgfA00	1.10.375.10	Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein	0.52	39.0	3.47e-01	81.3%	61.4%
2i9cA01	1.25.40.70	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK)	0.52	44.0	4.15e-01	95.6%	82.9%
5t1dB00	3.10.390.20	Alpha Beta › Roll › SAND domain › Viral glycoprotein L	0.51	37.0	3.65e-01	75.8%	93.9%
2lefA00	1.10.30.10	Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain	0.51	36.0	3.67e-01	71.4%	97.7%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3716068	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	50.0	3.44e-01	95.6%	60.0%
3582308	220.1.1.16 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF1681	0.58	40.0	4.01e-01	72.5%	90.5%
4305490	218.1.1.0 ↗	a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like	0.57	39.0	3.46e-01	70.3%	91.1%
3241726	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.56	40.0	2.73e-01	73.6%	53.3%
4502838	218.1.1.1 ↗	a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N	0.56	39.0	4.01e-01	72.5%	91.8%
2665702	3146.1.1.3 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL	0.55	40.0	3.72e-01	76.9%	87.0%
3177990	4015.1.1.1 ↗	alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1	0.55	40.0	3.01e-01	80.2%	94.9%
3216951	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	40.0	3.57e-01	80.2%	87.1%
3680555	284.1.3.0 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain	0.52	36.0	3.56e-01	72.5%	67.4%
2095479	1170.1.2.3 ↗	beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL	0.52	37.0	3.56e-01	75.8%	98.1%
4928637	2498.1.1.6 ↗	mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3	0.52	43.0	2.70e-01	92.3%	91.1%
3518991	284.1.3.4 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK	0.52	37.0	3.96e-01	76.9%	93.3%
1936538	3146.1.1.3 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL	0.51	37.0	3.65e-01	75.8%	93.9%

D3 medium residues 377-421_479-520

PDB

Domain cluster: rep: ORF3__NP_733855__Callitrichine_gammaherpesvirus_3__106331__D256-273_337-385_417-455

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	46.1	2.90e-12	56.3%	7.3%
PF01366.24	PRTP	35.5	4.80e-09	54.0%	6.6%

D4 medium residues 541-573_687-746

PDB

Domain cluster: rep: terminase_subunit_2__YP_009179297__Elephant_endotheliotropic_herpesvirus_4__548914__D513-536_648-697

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4am8E01	3.40.50.1370	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase	0.63	55.0	4.56e-01	97.8%	98.2%
1duvG01	3.40.50.1370	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase	0.62	53.0	4.58e-01	96.8%	96.7%
3grfA01	3.40.50.1370	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase	0.56	49.0	4.34e-01	97.8%	97.8%
4jpbW02	2.40.50.180	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4	0.53	28.0	3.06e-01	100.0%	59.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3459559	211.1.1.0 ↗	a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	0.60	31.0	4.06e-01	86.0%	100.0%

D5 medium residues 574-686

PDB

Domain cluster: rep: orf7__YP_009044394__Alcelaphine_gammaherpesvirus_2__138184__D511-616

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01366.24 best	PRTP	118.0	5.20e-34	82.3%	13.9%