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processivity_factor

Euk-Vir

Penguinpox_virus

processivity_factor__YP_009046183__Penguinpox_virus__648998

Identity

Accession:: YP_009046183 ↗
Protein ID:: processivity_factor
Kingdom:: euk

Quality

87.7 mean pLDDT

Cluster

View cluster (29 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-41

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05941.20 best	Chordopox_A20R	41.9	9.40e-11	100.0%	10.7%

CATH (29)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4od8D00	6.10.140.1880	Special › Helix non-globular › Helix Hairpins ›	0.94	88.0	7.84e-01	100.0%	74.5%
5t1dB00	3.10.390.20	Alpha Beta › Roll › SAND domain › Viral glycoprotein L	0.86	75.0	5.53e-01	100.0%	38.4%
2pbiA02	1.10.1240.60	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 ›	0.80	72.0	5.18e-01	100.0%	40.6%
2wmmA01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.76	64.0	5.95e-01	100.0%	98.0%
2kw6A00	6.10.140.1300	Special › Helix non-globular › Helix Hairpins ›	0.75	63.0	5.43e-01	100.0%	69.2%
6f1eA01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.74	62.0	4.32e-01	100.0%	31.7%
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.74	64.0	5.24e-01	100.0%	94.4%
1hr5A00	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.72	60.0	5.66e-01	100.0%	83.3%
7xrxB01	1.20.1420.20	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif	0.72	60.0	3.49e-01	100.0%	80.3%
6whbA01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.71	60.0	3.62e-01	100.0%	38.3%
2jx4A01	6.10.140.460	Special › Helix non-globular › Helix Hairpins ›	0.70	55.0	5.29e-01	97.4%	87.5%
2qkdA02	2.60.120.1040	Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain	0.69	55.0	3.89e-01	100.0%	31.4%
2ja2A04	1.10.8.70	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1	0.68	45.0	4.14e-01	92.1%	50.0%
2iexA02	1.10.12.10	Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2	0.67	52.0	4.79e-01	92.1%	66.7%
2nr4A02	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.66	54.0	4.88e-01	100.0%	69.0%
2nn4A00	1.10.287.760	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like	0.65	55.0	4.76e-01	100.0%	62.9%
2fe1A00	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.64	48.0	3.30e-01	81.6%	47.7%
8h6rA01	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.63	51.0	4.10e-01	97.4%	52.9%
2yevA02	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.62	50.0	4.10e-01	100.0%	47.3%
1x0tA01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.61	54.0	4.62e-01	100.0%	77.0%
1dliA03	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.61	48.0	3.84e-01	100.0%	48.9%
1skvA00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.60	45.0	4.12e-01	100.0%	60.9%
1tj7A01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.60	50.0	3.73e-01	100.0%	40.0%
4kb2A01	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.60	51.0	3.64e-01	94.7%	33.9%
3k6tB00	1.20.5.4010	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces ›	0.60	46.0	4.41e-01	100.0%	73.5%
2kp7A01	1.10.150.110	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like	0.59	43.0	3.78e-01	94.7%	48.6%
1rr7A01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.58	43.0	4.08e-01	78.9%	69.6%
4k08A00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.58	50.0	3.41e-01	100.0%	99.3%
4u1cA01	4.10.860.10	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain	0.57	45.0	4.22e-01	100.0%	75.0%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3554762	109.4.1.1832 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_17, TPR_16	0.98	84.0	4.91e-01	92.1%	14.0%
3928221	4.1.1.310 ↗	beta barrels › SH3 › SH3 › SH3 › PF26050	0.89	78.0	5.21e-01	100.0%	29.3%
2095479	1170.1.2.3 ↗	beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL	0.87	76.0	5.43e-01	100.0%	35.2%
2665702	3146.1.1.3 ↗	a+b complex topology › gH main domain › gH main domain › gH main domain › Phage_glycop_gL	0.82	68.0	4.94e-01	100.0%	33.9%
5058438	192.28.1.0 ↗	alpha bundles › Long alpha-hairpin › IDEAL domain › IDEAL domain	0.78	61.0	5.73e-01	100.0%	70.0%
3261569	192.19.1.0 ↗	alpha bundles › Long alpha-hairpin › YnzC-like › YnzC-like	0.76	61.0	5.47e-01	97.4%	68.3%
3756605	192.18.1.0 ↗	alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like	0.73	61.0	5.08e-01	97.4%	54.3%
4620691	632.2.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains	0.68	56.0	4.95e-01	97.4%	63.3%
3236421	616.1.1.21 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF4473	0.67	56.0	4.49e-01	94.7%	49.3%
4275352	166.1.1.1 ↗	alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C	0.66	46.0	3.49e-01	73.7%	30.5%
3873779	2004.1.1.463 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd	0.65	54.0	3.11e-01	100.0%	9.3%
3570117	375.6.1.2 ↗	few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275	0.63	54.0	4.62e-01	94.7%	61.7%
3682257	284.1.3.9 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › WLM	0.63	56.0	4.18e-01	100.0%	94.4%
3955662	316.1.1.0 ↗	a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase	0.58	47.0	3.13e-01	100.0%	78.3%

D2 high residues 57-211

PDB

Domain cluster: rep: Salt_Pond_R1_B_H2O_MG_scaffold_1_prodigal-single.1__X__X__00295__D161-347

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05941.20 best	Chordopox_A20R	162.8	1.60e-47	100.0%	45.8%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qwuA02	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.72	66.0	6.31e-01	100.0%	98.9%
1xk5A01	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.70	65.0	5.96e-01	100.0%	88.9%
4glwA01	3.30.470.30	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme	0.70	63.0	5.54e-01	96.8%	95.9%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3986583	206.1.3.23 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RNA_ligase	0.71	66.0	5.91e-01	100.0%	94.8%
4047933	206.1.3.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M	0.67	62.0	5.70e-01	100.0%	94.0%
4360726	206.1.3.0 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp	0.62	58.0	4.67e-01	100.0%	69.3%
4462824	2003.1.5.174 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15	0.51	40.0	3.11e-01	84.5%	52.8%
5013844	304.4.1.1 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg	0.50	28.0	3.64e-01	98.1%	100.0%

D3 high residues 215-298

PDB

Domain cluster: rep: OP328423.1__UXQ87776.1__X__00032__D51-131

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05941.20 best	Chordopox_A20R	95.0	6.40e-27	100.0%	25.0%

D4 high residues 308-431

PDB

Domain cluster: rep: DNA_polymerase_processivity_factor__YP_010085413__Eastern_grey_kangaroopox_virus__2042482__D312-439