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proliferating_cell_nuclearantigen

Euk-Vir

Lymphocystis_disease_virus_4

proliferating_cell_nuclearantigen__YP_010088003__Lymphocystis_disease_virus_4__2704413

Identity

Accession:
YP_010088003 ↗
Protein ID:
proliferating_cell_nuclearantigen
Kingdom:
euk

Quality

82.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Lymphocystivirus› Lymphocystis_disease_virus_4

TaxID: 2704413

Cluster

View cluster (140 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-121
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.92 83.0 6.33e-01 100.0% 45.7%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.91 82.0 6.31e-01 100.0% 47.1%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.91 84.0 6.36e-01 100.0% 46.2%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.90 82.0 6.22e-01 100.0% 46.1%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.90 78.0 5.95e-01 100.0% 44.3%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.90 81.0 6.17e-01 100.0% 46.3%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.88 78.0 6.20e-01 100.0% 50.2%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.88 81.0 6.08e-01 100.0% 45.0%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.87 80.0 7.89e-01 99.2% 92.7%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.86 73.0 5.64e-01 100.0% 44.2%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.84 79.0 5.91e-01 100.0% 48.3%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.83 75.0 5.75e-01 100.0% 45.5%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 75.0 7.30e-01 100.0% 91.4%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 67.0 6.76e-01 100.0% 90.0%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 62.0 6.38e-01 99.2% 94.7%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 66.0 5.05e-01 100.0% 48.3%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 65.0 4.84e-01 100.0% 47.0%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 64.0 5.53e-01 100.0% 64.4%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 63.0 6.23e-01 100.0% 91.3%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 63.0 6.14e-01 100.0% 89.2%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 41.0 4.01e-01 100.0% 69.9%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 44.0 4.10e-01 100.0% 69.6%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.52 40.0 4.08e-01 93.3% 82.2%
1njkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 41.0 4.01e-01 100.0% 79.7%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.50 43.0 3.33e-01 95.0% 96.7%
ECOD (96)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044014 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.92 83.0 8.50e-01 100.0% 96.5%
4057537 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.92 83.0 8.18e-01 100.0% 88.8%
5047575 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.92 84.0 8.32e-01 100.0% 90.4%
4142781 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.92 83.0 8.24e-01 100.0% 89.6%
4941928 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.92 82.0 8.26e-01 100.0% 92.5%
143269 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.92 82.0 8.15e-01 100.0% 89.6%
5043506 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.91 82.0 8.06e-01 100.0% 88.8%
4178829 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.91 80.0 7.94e-01 100.0% 88.0%
3602548 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.91 82.0 8.07e-01 100.0% 89.6%
5056757 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.91 81.0 7.98e-01 100.0% 88.8%
4096140 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.91 83.0 8.17e-01 100.0% 91.2%
4302174 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.90 81.0 7.96e-01 100.0% 88.8%
5052550 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.90 84.0 8.29e-01 100.0% 92.8%
2442100 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.90 84.0 7.97e-01 100.0% 85.3%
5990 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.90 78.0 7.79e-01 100.0% 88.5%
4987602 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.90 81.0 8.01e-01 100.0% 90.4%
4934001 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.90 83.0 8.22e-01 100.0% 92.8%
4937819 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.90 81.0 7.99e-01 100.0% 90.4%
5078494 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.90 80.0 7.93e-01 100.0% 89.6%
4936049 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.89 77.0 7.79e-01 100.0% 90.0%
4599875 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.89 77.0 7.71e-01 100.0% 89.2%
5023031 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.89 81.0 8.03e-01 100.0% 91.2%
5000467 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.89 85.0 8.15e-01 100.0% 92.6%
5027066 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.89 79.0 7.79e-01 100.0% 88.8%
4172290 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.89 82.0 7.95e-01 100.0% 89.2%
4043935 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.89 85.0 8.21e-01 100.0% 91.5%
4995027 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.88 77.0 7.62e-01 100.0% 87.2%
2392830 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.88 80.0 7.73e-01 100.0% 86.3%
1822927 227.1.1.2 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.88 82.0 7.23e-01 100.0% 71.2%
162047 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.88 79.0 7.74e-01 100.0% 88.2%
4870150 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.88 81.0 7.80e-01 100.0% 86.6%
4059128 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.88 76.0 7.66e-01 100.0% 90.0%
4939065 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.88 76.0 7.64e-01 100.0% 90.0%
5070586 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.88 79.0 7.77e-01 100.0% 90.4%
5037344 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.88 79.0 7.90e-01 100.0% 94.2%
3520418 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.87 84.0 7.66e-01 100.0% 90.0%
5991 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.87 77.0 7.67e-01 100.0% 91.0%
3351110 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.87 81.0 8.11e-01 100.0% 97.5%
4943404 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.87 80.0 7.77e-01 100.0% 89.2%
143267 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.86 79.0 7.76e-01 100.0% 90.6%
4998584 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.86 82.0 7.87e-01 100.0% 88.9%
4026073 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.86 83.0 8.16e-01 100.0% 96.8%
136536 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.86 74.0 7.38e-01 100.0% 88.5%
4980359 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.86 74.0 7.43e-01 100.0% 90.0%
4983063 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.86 77.0 7.60e-01 100.0% 90.4%
3407531 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.86 79.0 7.54e-01 100.0% 85.9%
5011281 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.85 76.0 7.51e-01 100.0% 89.6%
3624709 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.85 78.0 7.57e-01 100.0% 88.5%
5059299 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.85 73.0 7.37e-01 100.0% 90.0%
3230926 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.85 77.0 7.51e-01 100.0% 88.5%
4936050 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.85 76.0 7.56e-01 100.0% 91.2%
4456195 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.85 75.0 7.57e-01 100.0% 93.3%
5033948 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.84 74.0 7.23e-01 100.0% 86.2%
3936915 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.84 78.0 7.64e-01 100.0% 91.5%
3238130 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.84 80.0 7.39e-01 100.0% 84.8%
4941929 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.84 74.0 7.30e-01 100.0% 88.3%
4976500 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 75.0 7.31e-01 100.0% 88.3%
3230925 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.83 77.0 7.49e-01 100.0% 90.0%
5037345 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 78.0 7.48e-01 100.0% 88.7%
5029787 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 72.0 7.28e-01 100.0% 91.7%
4991675 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 75.0 7.42e-01 100.0% 91.2%
4948360 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 74.0 7.19e-01 100.0% 86.8%
5027067 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 75.0 7.58e-01 100.0% 95.8%
167574 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 73.0 7.13e-01 100.0% 85.5%
5039027 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.83 72.0 7.30e-01 100.0% 92.5%
4660283 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 75.0 7.40e-01 100.0% 92.0%
3788095 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.83 78.0 7.50e-01 100.0% 88.9%
3193266 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.83 77.0 7.20e-01 100.0% 89.7%
3997015 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.83 76.0 7.41e-01 100.0% 90.0%
4372908 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.83 70.0 6.97e-01 100.0% 86.4%
5051689 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.83 74.0 7.32e-01 100.0% 91.2%
3624708 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.82 76.0 7.28e-01 100.0% 86.7%
4943405 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 75.0 7.39e-01 100.0% 92.0%
4998585 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 71.0 7.17e-01 100.0% 91.7%
2588759 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 73.0 7.30e-01 100.0% 93.4%
4517015 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.82 73.0 7.21e-01 100.0% 91.1%
3478975 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 76.0 7.24e-01 100.0% 87.4%
4934002 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 72.0 7.02e-01 100.0% 86.9%
138072 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 75.0 7.27e-01 100.0% 89.3%
4983064 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 72.0 7.19e-01 100.0% 91.9%
4929645 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 72.0 7.13e-01 100.0% 91.2%
1290662 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 75.0 7.00e-01 100.0% 82.5%
4026069 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 75.0 7.22e-01 100.0% 88.1%
3936914 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 74.0 7.19e-01 100.0% 90.0%
4956740 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 7.16e-01 100.0% 92.0%
5043507 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 7.26e-01 100.0% 95.8%
4212381 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 73.0 6.99e-01 100.0% 85.9%
3251045 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 73.0 6.64e-01 100.0% 75.3%
5074320 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 74.0 7.24e-01 100.0% 91.5%
3932751 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 73.0 7.15e-01 100.0% 90.8%
3292092 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 75.0 7.19e-01 100.0% 90.3%
4030418 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 75.0 7.05e-01 100.0% 90.7%
5060716 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 73.0 7.10e-01 100.0% 90.8%
3406312 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.79 71.0 7.08e-01 100.0% 93.5%
5037314 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.78 69.0 6.96e-01 100.0% 94.2%
2476832 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.72 64.0 6.17e-01 100.0% 85.9%
D2 medium residues 135-217
PDB
Domain cluster: rep: hypothetical_protein_pv_4__YP_009000906__Pithovirus_sibericum__1450746__D173-260