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protease,_partial
Euk-VirSimian_retrovirus_8
protease,_partial__YP_009305200__Simian_retrovirus_8__1904439
Identity
- Accession:
- YP_009305200 ↗
- Protein ID:
- protease,_partial
- Kingdom:
- euk
Quality
69.3
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Retroviridae›
Betaretrovirus›
Simian_retrovirus_8
TaxID: 1904439
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-138
Domain cluster:
rep: GP72__YP_007417837__Caviid_betaherpesvirus_2__33706__D239-337
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00692.25 best | dUTPase | 94.4 | 6.90e-27 | 100.0% | 74.4% |
D2
high
residues 173-265
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00077.26 best | RVP | 98.5 | 3.30e-28 | 100.0% | 90.1% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3sqfA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.95 | 92.0 | 9.14e-01 | 100.0% | 97.9% |
| 3slzA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.87 | 77.0 | 7.16e-01 | 100.0% | 76.3% |
| 1fmbA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.85 | 78.0 | 7.50e-01 | 100.0% | 87.5% |
| 1mvpA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.82 | 79.0 | 7.30e-01 | 100.0% | 85.7% |
| 1a94A00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.82 | 71.0 | 6.95e-01 | 100.0% | 86.9% |
| 3liyA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.82 | 75.0 | 6.98e-01 | 100.0% | 86.2% |
| 2fivA00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.81 | 76.0 | 7.05e-01 | 100.0% | 86.7% |
| 1yg9A02 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.75 | 67.0 | 6.02e-01 | 98.9% | 96.9% |
| 1xakA00 | 2.60.40.1550 | Mainly Beta › Sandwich › Immunoglobulin-like › SARS coronavirus X4 | 0.53 | 27.0 | 3.05e-01 | 77.4% | 63.2% |
| 4ak1A02 | 2.30.30.1270 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 31.0 | 3.58e-01 | 82.8% | 84.4% |
| 5uv6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 29.0 | 3.04e-01 | 77.4% | 60.7% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2543743 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.99 | 94.0 | 8.87e-01 | 100.0% | 84.9% |
| 4171670 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.93 | 88.0 | 8.23e-01 | 100.0% | 83.6% |
| 3933581 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.86 | 80.0 | 7.54e-01 | 100.0% | 97.3% |
| 4 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.85 | 78.0 | 7.49e-01 | 100.0% | 87.5% |
| 3931343 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.85 | 79.0 | 7.28e-01 | 100.0% | 86.1% |
| 3924552 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.84 | 78.0 | 7.13e-01 | 100.0% | 81.7% |
| 3366156 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.84 | 78.0 | 7.10e-01 | 100.0% | 85.8% |
| 4955491 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.83 | 77.0 | 6.73e-01 | 100.0% | 80.0% |
| 3274948 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.83 | 77.0 | 6.37e-01 | 100.0% | 60.6% |
| 3936343 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.83 | 77.0 | 6.87e-01 | 100.0% | 84.0% |
| 2793644 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.83 | 72.0 | 7.04e-01 | 100.0% | 86.9% |
| 1 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.83 | 71.0 | 5.43e-01 | 100.0% | 42.4% |
| 1249817 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.82 | 71.0 | 6.96e-01 | 100.0% | 86.9% |
| 3924865 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.82 | 76.0 | 6.90e-01 | 100.0% | 86.7% |
| 139793 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.82 | 75.0 | 6.95e-01 | 100.0% | 86.2% |
| 3878578 | 1.1.1.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › PF30863 | 0.82 | 75.0 | 6.74e-01 | 100.0% | 82.4% |
| 2 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.81 | 76.0 | 7.05e-01 | 100.0% | 86.7% |
| 3933534 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.81 | 75.0 | 7.50e-01 | 100.0% | 100.0% |
| 3506527 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.81 | 75.0 | 7.35e-01 | 100.0% | 93.0% |
| 4932925 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.81 | 74.0 | 6.75e-01 | 98.9% | 90.8% |
| 4993656 | 1.1.1.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP | 0.81 | 75.0 | 6.82e-01 | 100.0% | 85.0% |
| 5049040 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.81 | 72.0 | 6.85e-01 | 96.8% | 88.0% |
| 3930502 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.80 | 74.0 | 6.96e-01 | 100.0% | 95.5% |
| 4955517 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.80 | 73.0 | 6.88e-01 | 98.9% | 88.2% |
| 3933760 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.80 | 72.0 | 6.86e-01 | 100.0% | 93.6% |
| 3797424 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.79 | 72.0 | 5.89e-01 | 100.0% | 77.6% |
| 3506977 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.79 | 72.0 | 6.18e-01 | 100.0% | 79.0% |
| 5034399 | 1.1.1.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 | 0.78 | 73.0 | 6.38e-01 | 100.0% | 76.7% |
| 3502540 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.78 | 63.0 | 6.39e-01 | 84.9% | 98.9% |
| 3579212 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.78 | 63.0 | 6.07e-01 | 86.0% | 100.0% |
| 3579423 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.78 | 70.0 | 5.98e-01 | 100.0% | 92.0% |
| 3793978 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.76 | 69.0 | 5.69e-01 | 100.0% | 81.8% |
| 3793329 | 1.1.1.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › DUF1758 | 0.74 | 56.0 | 5.77e-01 | 81.7% | 96.7% |
| 3785193 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.70 | 63.0 | 6.03e-01 | 100.0% | 86.7% |
| 4352306 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.70 | 58.0 | 5.59e-01 | 90.3% | 81.9% |
| 3836120 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.59 | 51.0 | 3.98e-01 | 93.5% | 79.0% |
| 4015760 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.59 | 50.0 | 3.97e-01 | 93.5% | 76.4% |