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protease

Euk-Vir

Lamium_mild_mosaic_virus

protease__YP_008877669__Lamium_mild_mosaic_virus__1432135

Identity

Accession:
YP_008877669 ↗
Protein ID:
protease
Kingdom:
euk

Quality

92.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-94
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 66.0 6.47e-01 91.5% 99.0%
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 67.0 6.84e-01 94.7% 100.0%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 60.0 5.66e-01 86.2% 86.6%
1qa7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 66.0 6.32e-01 98.9% 90.0%
1shyA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 59.0 5.77e-01 86.2% 89.2%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 59.0 5.63e-01 86.2% 87.9%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 64.0 5.07e-01 100.0% 49.4%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 58.0 5.46e-01 86.2% 90.3%
1eq9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 58.0 5.65e-01 87.2% 88.6%
4lk4A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 58.0 5.81e-01 87.2% 100.0%
3dfjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 58.0 5.47e-01 87.2% 85.0%
1p3cA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 60.0 5.66e-01 89.4% 88.2%
1p57B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 58.0 5.38e-01 87.2% 79.7%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 57.0 5.43e-01 86.2% 82.9%
1ekbB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 58.0 5.52e-01 87.2% 89.9%
1ym0A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 57.0 5.40e-01 86.2% 86.6%
6mv4H02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 58.0 5.55e-01 87.2% 88.0%
1m9uA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 58.0 5.51e-01 87.2% 90.8%
5f8zA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 58.0 5.44e-01 87.2% 88.4%
1orfA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 58.0 5.58e-01 87.2% 87.6%
2r0lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 58.0 5.42e-01 87.2% 88.5%
1fiwA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 57.0 5.30e-01 87.2% 89.2%
1a5iA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 57.0 5.31e-01 87.2% 89.8%
2oq5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 57.0 5.56e-01 87.2% 88.5%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 57.0 5.43e-01 87.2% 87.3%
2as9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 60.0 6.00e-01 91.5% 98.9%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 52.0 4.02e-01 81.9% 36.6%
5fcrC02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 56.0 5.39e-01 87.2% 89.7%
5eokA05 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 61.0 4.56e-01 96.8% 51.3%
4f4oC03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 54.0 5.56e-01 84.0% 100.0%
1a7sA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 56.0 5.41e-01 87.2% 86.7%
1ao5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 56.0 5.22e-01 87.2% 88.7%
5lpeB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 55.0 5.58e-01 86.2% 89.2%
1dleA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 60.0 5.42e-01 96.8% 86.0%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 51.0 5.37e-01 81.9% 87.1%
2xrcC04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 55.0 4.44e-01 87.2% 48.9%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 54.0 5.22e-01 86.2% 87.9%
2qy0B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 54.0 5.18e-01 86.2% 88.9%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 57.0 5.34e-01 91.5% 84.1%
1j71A02 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.65 53.0 4.52e-01 91.5% 80.1%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.64 53.0 4.11e-01 91.5% 91.6%
1t2pA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.64 51.0 4.43e-01 87.2% 95.9%
2w1jA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.63 51.0 4.09e-01 89.4% 87.7%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.61 54.0 4.91e-01 98.9% 85.6%
4d70A00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.60 50.0 4.19e-01 90.4% 85.6%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 4.09e-01 70.2% 73.9%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 40.0 4.26e-01 71.3% 84.8%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.56 31.0 3.07e-01 80.9% 48.0%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.54 37.0 3.93e-01 72.3% 90.5%
1yhpA02 2.60.40.1720 Mainly Beta › Sandwich › Immunoglobulin-like › Calcium-dependent cell adhesion molecule-1 0.53 46.0 4.22e-01 93.6% 85.8%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 27.0 3.13e-01 80.9% 67.7%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.52 37.0 3.76e-01 73.4% 87.8%
1mrzB02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.51 35.0 3.30e-01 71.3% 62.5%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
22087 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.76 64.0 4.69e-01 91.5% 42.9%
1826904 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 64.0 4.68e-01 91.5% 42.3%
2512790 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.76 64.0 4.70e-01 91.5% 41.9%
3106034 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.75 65.0 4.79e-01 93.6% 45.2%
4318415 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.74 56.0 5.66e-01 79.8% 81.1%
1871771 1.1.5.43 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like 0.72 56.0 5.32e-01 84.0% 70.3%
3859610 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 60.0 4.54e-01 91.5% 44.0%
3404225 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 62.0 4.75e-01 95.7% 42.4%
3377696 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.71 64.0 4.99e-01 98.9% 54.0%
3402403 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 62.0 4.41e-01 95.7% 96.4%
3390982 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 60.0 4.47e-01 91.5% 42.5%
3403314 1.1.5.46 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF1986 0.71 65.0 4.93e-01 100.0% 50.7%
3913731 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 63.0 4.52e-01 97.9% 42.2%
None 0.71 60.0 4.38e-01 91.5% 41.1%
3398006 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 60.0 4.43e-01 91.5% 41.4%
3389000 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 60.0 4.42e-01 91.5% 40.0%
3867774 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.71 62.0 3.87e-01 96.8% 32.4%
3899014 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 63.0 4.74e-01 97.9% 47.6%
4251394 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 62.0 4.50e-01 96.8% 44.9%
4398032 1.1.5.26 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.71 56.0 5.24e-01 84.0% 74.8%
3555390 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 60.0 4.38e-01 91.5% 41.6%
3857329 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 60.0 4.43e-01 91.5% 42.6%
3399834 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.71 61.0 4.63e-01 94.7% 47.3%
3416144 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.71 59.0 4.52e-01 95.7% 40.5%
3901203 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 62.0 4.46e-01 97.9% 42.3%
3772106 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.70 60.0 4.57e-01 97.9% 39.6%
3407037 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 59.0 4.42e-01 92.6% 45.5%
3391188 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 59.0 4.35e-01 91.5% 41.2%
4532481 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 62.0 4.37e-01 97.9% 43.1%
3399484 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 61.0 4.58e-01 95.7% 47.0%
4251395 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 61.0 5.00e-01 96.8% 68.4%
3562166 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 61.0 4.43e-01 96.8% 44.2%
3546733 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 61.0 4.49e-01 96.8% 41.6%
3918154 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 61.0 4.28e-01 96.8% 37.7%
3913172 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 61.0 4.65e-01 97.9% 82.5%
3545090 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.69 59.0 4.50e-01 96.8% 40.0%
3816110 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.69 59.0 4.49e-01 94.7% 46.7%
3534236 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 61.0 4.37e-01 97.9% 45.4%
3755818 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 61.0 4.41e-01 97.9% 43.0%
3816594 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.69 61.0 4.50e-01 96.8% 45.0%
3409584 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 61.0 4.35e-01 96.8% 79.5%
4520605 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.69 51.0 4.72e-01 92.6% 61.3%
3748285 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 61.0 4.91e-01 97.9% 56.7%
3397229 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 60.0 4.49e-01 95.7% 41.3%
1217180 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 61.0 4.30e-01 100.0% 44.6%
3552125 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 58.0 4.23e-01 91.5% 40.6%
3388510 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.69 58.0 4.22e-01 92.6% 38.8%
3539395 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.69 60.0 5.26e-01 96.8% 80.0%
3967090 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 51.0 5.42e-01 78.7% 91.3%
3544606 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 61.0 4.33e-01 97.9% 43.9%
3860909 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 57.0 4.25e-01 91.5% 41.7%
3388883 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 61.0 4.52e-01 98.9% 44.6%
1310585 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.68 58.0 4.33e-01 96.8% 38.3%
3409619 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 60.0 4.35e-01 97.9% 45.4%
3870111 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 59.0 4.35e-01 96.8% 45.2%
3397710 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.68 59.0 4.38e-01 96.8% 43.3%
2137681 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 55.0 5.30e-01 89.4% 90.8%
3942928 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 54.0 5.63e-01 85.1% 98.8%
3966602 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 54.0 5.00e-01 86.2% 75.8%
3893666 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.67 59.0 4.33e-01 97.9% 49.4%
3546177 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.67 59.0 4.40e-01 97.9% 46.0%
3855145 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.67 59.0 4.24e-01 97.9% 43.6%
3406002 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 60.0 4.54e-01 100.0% 42.6%
3405914 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 59.0 4.22e-01 97.9% 43.3%
3947980 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.66 54.0 5.31e-01 86.2% 92.0%
1344807 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 57.0 4.33e-01 95.7% 41.6%
4656452 1.1.13.63 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Queuosine_synth 0.60 52.0 4.71e-01 95.7% 98.5%
3678815 1.1.1.20 beta barrels › cradle loop barrel › RIFT-related › acid protease › TAXi_C+TAXi_N 0.54 43.0 2.96e-01 87.2% 45.4%
3508541 101.1.2.16 alpha arrays › HTH › HTH › winged helix domain › Rep3_N 0.52 40.0 3.64e-01 83.0% 93.1%
3218584 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 4.06e-01 86.2% 100.0%
4464688 884.1.1.1 a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C 0.51 31.0 3.16e-01 72.3% 59.6%
4286961 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.50 34.0 3.85e-01 72.3% 95.7%
D2 medium residues 95-210
PDB