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protease

Euk-Vir

Psittacine_adenovirus_3

protease__YP_009112725__Psittacine_adenovirus_3__1580497

Identity

Accession:: YP_009112725 ↗
Protein ID:: protease
Kingdom:: euk

Quality

81.2 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Barthadenovirus› Psittacine_adenovirus_3

TaxID: 1580497

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-111

PDB

Domain cluster: rep: protease__YP_004300214__Simian_adenovirus_49__995022__D1-112

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00770.25 best	Peptidase_C5	134.4	5.20e-39	81.1%	50.3%

D2 medium residues 112-197

PDB

Domain cluster: rep: protease__YP_007347007__Bovine_adenovirus_6__111167__D111-195

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00770.25 best	Peptidase_C5	84.8	8.30e-24	100.0%	49.2%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ekfA00	3.40.395.10	Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A	0.90	85.0	6.32e-01	100.0%	46.4%
3e9lA02	1.20.80.40	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region	0.59	49.0	4.80e-01	90.7%	94.7%
1gd5A00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.57	46.0	4.08e-01	90.7%	63.1%
1aoaA01	1.10.418.10	Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain	0.57	48.0	4.32e-01	97.7%	67.8%
2yrnA01	1.10.418.10	Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain	0.57	41.0	3.64e-01	76.7%	89.6%
1pq4A01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.56	49.0	4.13e-01	100.0%	86.2%
3hh8A01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.56	49.0	4.12e-01	98.8%	94.6%
2qwoB00	1.10.287.110	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain	0.55	44.0	4.40e-01	93.0%	83.7%
3iq2A00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.54	43.0	3.91e-01	89.5%	78.9%
1h5zA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.52	43.0	2.81e-01	94.2%	65.7%
1ocsA00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.52	41.0	3.68e-01	89.5%	78.0%
8agyA01	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.52	44.0	3.30e-01	98.8%	75.0%
2pkeA02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.51	40.0	4.20e-01	96.5%	97.4%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3583637	193.1.1.1 ↗	alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH	0.63	49.0	4.42e-01	93.0%	59.2%
4010451	3788.1.1.15 ↗	alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202	0.58	40.0	4.29e-01	76.7%	82.7%
3530949	3291.1.1.231 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF27745	0.57	39.0	3.28e-01	70.9%	92.7%
4946470	2007.1.14.4 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA	0.56	49.0	4.18e-01	100.0%	92.7%
3730190	277.1.1.1 ↗	a+b two layers › PX domain › PX domain › PX domain › PX	0.56	47.0	4.15e-01	94.2%	64.6%
4033673	829.1.1.2 ↗	a+b duplicates or obligate multimers › NinB › NinB › NinB › HNHc_6	0.56	48.0	4.85e-01	94.2%	97.6%
3388106	2007.1.14.4 ↗	a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › ZnuA	0.55	49.0	4.10e-01	100.0%	96.0%
4592663	3978.1.1.1 ↗	alpha complex topology › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › Integral membrane Acyl-CoA desaturase › FA_desaturase	0.53	45.0	3.07e-01	95.3%	30.3%
3706157	601.15.1.2 ↗	alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha) › PA28_C	0.53	38.0	2.81e-01	76.7%	45.1%