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protease

Euk-Vir

Simian_adenovirus_8

protease__YP_009174950__Simian_adenovirus_8__413258

Identity

Accession:: YP_009174950 ↗
Protein ID:: protease
Kingdom:: euk

Quality

86.8 mean pLDDT

Taxonomy

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Mastadenovirus› Simian_adenovirus_8

TaxID: 413258

Cluster

View cluster (58 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-110

PDB

Domain cluster: rep: protease__YP_004300214__Simian_adenovirus_49__995022__D1-112

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00770.25 best	Peptidase_C5	146.0	1.40e-42	81.8%	49.7%

D2 medium residues 111-198

PDB

Domain cluster: rep: protease__YP_007347007__Bovine_adenovirus_6__111167__D111-195

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00770.25 best	Peptidase_C5	122.6	2.10e-35	100.0%	49.2%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ekfA00	3.40.395.10	Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A	1.00	97.0	7.17e-01	100.0%	45.8%
3iq2A00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.57	47.0	4.26e-01	92.0%	78.9%
1gd5A00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.56	46.0	4.11e-01	92.0%	76.9%
4fz4A00	1.20.140.130	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.56	44.0	3.74e-01	86.4%	74.0%
4htlA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.55	43.0	3.40e-01	84.1%	76.8%
1kn1B00	1.10.490.20	Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins	0.55	43.0	3.58e-01	85.2%	70.2%
1ocsA00	3.30.1520.10	Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain	0.55	46.0	4.03e-01	92.0%	78.0%
3hh8A01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.54	47.0	4.01e-01	100.0%	94.6%
1oj6A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	42.0	3.61e-01	86.4%	87.8%
3t0yA01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.53	34.0	3.84e-01	75.0%	86.4%
3k1hA00	3.30.1120.180	Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076	0.53	42.0	3.84e-01	85.2%	82.6%
2rd9B01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.50	39.0	3.22e-01	86.4%	88.0%
7qovB01	1.10.472.20	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit	0.50	41.0	3.87e-01	94.3%	74.1%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
153044	219.1.1.5 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C5	1.00	97.0	7.17e-01	100.0%	45.8%
3523787	7558.1.1.1 ↗	a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase	0.59	41.0	2.81e-01	72.7%	30.5%
4228716	277.1.1.1 ↗	a+b two layers › PX domain › PX domain › PX domain › PX	0.58	48.0	4.19e-01	90.9%	75.6%
3730190	277.1.1.1 ↗	a+b two layers › PX domain › PX domain › PX domain › PX	0.57	46.0	4.13e-01	90.9%	78.5%
3559446	376.1.3.32 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom	0.56	43.0	4.20e-01	84.1%	94.0%
3741777	277.1.1.1 ↗	a+b two layers › PX domain › PX domain › PX domain › PX	0.54	44.0	3.92e-01	93.2%	84.4%