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protease
Euk-VirPigeon_adenovirus_2
protease__YP_009310438__Pigeon_adenovirus_2__1907767
Identity
- Accession:
- YP_009310438 ↗
- Protein ID:
- protease
- Kingdom:
- euk
Quality
85.6
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Pigeon_adenovirus_2
TaxID: 1907767
Cluster
View cluster (58 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-112
Domain cluster:
rep: protease__YP_004300214__Simian_adenovirus_49__995022__D1-112
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00770.25 best | Peptidase_C5 | 151.9 | 2.10e-44 | 81.2% | 50.8% |
D2
medium
residues 113-205
Domain cluster:
rep: protease__YP_007347007__Bovine_adenovirus_6__111167__D111-195
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00770.25 best | Peptidase_C5 | 112.5 | 2.60e-32 | 94.6% | 48.0% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ekfA00 | 3.40.395.10 | Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A | 0.97 | 91.0 | 6.84e-01 | 96.8% | 46.9% |
| 1x9mA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.68 | 53.0 | 4.00e-01 | 83.9% | 85.0% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 47.0 | 4.04e-01 | 89.2% | 87.7% |
| 4fz4A00 | 1.20.140.130 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.57 | 43.0 | 3.65e-01 | 79.6% | 73.4% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.55 | 46.0 | 4.61e-01 | 90.3% | 95.8% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 45.0 | 4.14e-01 | 93.5% | 80.8% |
| 1nu7D01 | 1.20.120.750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle domain 1 | 0.55 | 38.0 | 3.41e-01 | 72.0% | 80.0% |
| 3hh8A01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 46.0 | 3.96e-01 | 93.5% | 92.6% |
| 1n1fA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 43.0 | 3.74e-01 | 94.6% | 94.8% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 43.0 | 3.75e-01 | 92.5% | 97.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 153044 | 219.1.1.5 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C5 | 0.97 | 91.0 | 6.84e-01 | 96.8% | 46.9% |
| 3583637 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.62 | 47.0 | 4.32e-01 | 91.4% | 60.8% |
| 4228716 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.60 | 49.0 | 4.37e-01 | 88.2% | 75.6% |
| 3259377 | 621.1.1.0 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain | 0.52 | 41.0 | 4.12e-01 | 91.4% | 81.1% |
| 3523787 | 7558.1.1.1 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase | 0.52 | 38.0 | 2.74e-01 | 79.6% | 56.4% |