protease

Euk-Vir

Odocoileus_adenovirus_1

protease__YP_009414583__Odocoileus_adenovirus_1__78522

Identity

93.4 mean pLDDT

Bamfordvirae› Preplasmiviricota› Pharingeaviricetes› Rowavirales› Adenoviridae› Barthadenovirus› Odocoileus_adenovirus_1

TaxID: 78522

View cluster (58 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-110

PDB

Domain cluster: rep: protease__YP_004300214__Simian_adenovirus_49__995022__D1-112

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00770.25 best	Peptidase_C5	134.3	5.30e-39	80.9%	49.7%

D2 medium residues 111-199

PDB

Domain cluster: rep: protease__YP_007347007__Bovine_adenovirus_6__111167__D111-195

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00770.25 best	Peptidase_C5	95.5	4.50e-27	97.8%	49.2%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ekfA00	3.40.395.10	Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A	0.95	92.0	6.82e-01	100.0%	47.9%
4fz4A00	1.20.140.130	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.58	42.0	3.57e-01	78.7%	76.0%
2ogwA01	3.40.50.1980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain	0.57	51.0	4.34e-01	100.0%	90.5%
3hyuA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.56	44.0	3.86e-01	86.5%	88.7%
3qkxB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.56	40.0	3.19e-01	75.3%	71.3%
2wyoC01	3.30.1490.250	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.53	42.0	4.04e-01	87.6%	85.6%
3u37A02	3.40.50.1110	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase	0.52	44.0	3.25e-01	94.4%	79.4%
3rjvA02	1.25.40.740	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.51	28.0	3.14e-01	96.6%	70.3%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
153044	219.1.1.5 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C5	0.95	92.0	6.82e-01	100.0%	47.9%
3788516	375.10.1.2 ↗	few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha › zf-DPOE	0.59	41.0	3.25e-01	73.0%	61.0%
3228153	5001.1.1.33 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srh	0.57	46.0	3.31e-01	92.1%	61.3%
4243505	3415.1.1.4 ↗	alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate	0.56	39.0	2.64e-01	71.9%	86.8%
5002487	304.55.2.1 ↗	a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp	0.53	44.0	3.92e-01	94.4%	71.9%
3284090	2484.1.1.32 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_C	0.51	41.0	3.02e-01	87.6%	59.2%