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protein_3C

Euk-Vir

Encephalomyocarditis_virus

protein_3C__NP_740410__Encephalomyocarditis_virus__12104

Identity

Accession:
NP_740410 ↗
Protein ID:
protein_3C
Kingdom:
euk

Quality

91.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-94_193-202
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bhgA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.91 77.0 7.72e-01 88.9% 92.4%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 68.0 6.49e-01 88.9% 94.1%
1qa7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 73.0 6.76e-01 97.8% 90.9%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 71.0 6.58e-01 100.0% 100.0%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 61.0 6.13e-01 88.9% 86.5%
5f8zA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 68.0 6.35e-01 100.0% 99.1%
1m9uA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 66.0 6.23e-01 96.7% 100.0%
5eokA05 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 67.0 4.92e-01 97.8% 90.9%
4kkdB04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 68.0 6.05e-01 98.9% 100.0%
6mv4H02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 68.0 6.36e-01 98.9% 99.1%
1dx5M02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 68.0 6.15e-01 100.0% 99.2%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 68.0 5.58e-01 100.0% 75.2%
3k6yA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 60.0 5.95e-01 92.2% 83.7%
1dleA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.74 67.0 5.91e-01 100.0% 88.4%
1ym0A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 67.0 6.21e-01 100.0% 100.0%
1faxA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 67.0 6.31e-01 100.0% 100.0%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 65.0 6.05e-01 97.8% 100.0%
1fiwA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 65.0 5.90e-01 97.8% 98.3%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 60.0 6.01e-01 88.9% 97.8%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 66.0 6.27e-01 100.0% 100.0%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 61.0 4.52e-01 91.1% 47.9%
1ltoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 64.0 6.01e-01 97.8% 99.1%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.72 61.0 5.72e-01 92.2% 96.4%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.71 63.0 6.05e-01 96.7% 98.1%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 55.0 4.45e-01 84.4% 73.7%
2r0xA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 56.0 4.61e-01 84.4% 78.8%
5lhrA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 63.0 5.78e-01 100.0% 99.1%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 55.0 4.24e-01 84.4% 68.5%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 55.0 4.91e-01 84.4% 82.8%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 56.0 4.68e-01 85.6% 85.4%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 55.0 4.20e-01 84.4% 63.9%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 55.0 4.28e-01 84.4% 67.9%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 55.0 4.75e-01 84.4% 83.9%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 55.0 4.49e-01 84.4% 74.5%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 55.0 4.85e-01 84.4% 81.9%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 50.0 4.59e-01 84.4% 89.3%
4x28A02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.64 44.0 4.12e-01 71.1% 91.0%
3pftA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 46.0 3.94e-01 84.4% 78.8%
3ci6B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 41.0 3.37e-01 74.4% 75.2%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.57 48.0 4.48e-01 94.4% 83.6%
3oovA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 42.0 3.42e-01 76.7% 81.1%
4mmnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 41.0 3.52e-01 76.7% 85.1%
6es9A01 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.56 40.0 3.68e-01 75.6% 87.5%
3mmhA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 41.0 3.34e-01 76.7% 71.3%
5uzgA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 39.0 3.98e-01 74.4% 97.8%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.59e-01 70.0% 92.7%
2c5dC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.62e-01 70.0% 94.2%
6p58A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 40.0 3.41e-01 76.7% 87.3%
7lscA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 40.0 3.40e-01 76.7% 87.9%
3w2zA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 40.0 3.21e-01 76.7% 76.4%
3eeaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 39.0 3.29e-01 75.6% 83.7%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 39.0 3.06e-01 76.7% 76.0%
5l10B00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.52 37.0 3.06e-01 74.4% 80.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3066474 1.1.17.2 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.94 89.0 6.56e-01 100.0% 90.9%
376155 1.1.17.2 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.88 83.0 6.25e-01 100.0% 95.4%
1096110 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.80 73.0 5.36e-01 97.8% 88.9%
None 0.80 73.0 5.36e-01 97.8% 88.8%
None 0.80 72.0 5.33e-01 97.8% 88.5%
2526961 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.79 72.0 5.29e-01 97.8% 86.9%
3783835 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 70.0 4.96e-01 100.0% 84.2%
134809 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 71.0 5.19e-01 100.0% 95.2%
3397446 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.77 70.0 4.99e-01 98.9% 87.6%
3405652 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 70.0 4.99e-01 98.9% 93.5%
3497558 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 70.0 4.97e-01 100.0% 94.5%
3246192 1.1.17.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.76 69.0 4.76e-01 97.8% 86.1%
5051302 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.76 70.0 5.12e-01 100.0% 90.7%
3791975 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 68.0 4.78e-01 98.9% 95.6%
3017386 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.75 69.0 4.93e-01 100.0% 94.8%
3633439 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.75 69.0 4.84e-01 100.0% 82.2%
239 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.75 67.0 4.83e-01 96.7% 95.0%
3225260 1.1.17.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.74 66.0 4.70e-01 97.8% 87.2%
3448106 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.74 68.0 4.87e-01 100.0% 87.2%
3405914 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 68.0 4.74e-01 100.0% 91.3%
1217153 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 68.0 4.60e-01 100.0% 86.1%
3393791 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 68.0 4.87e-01 100.0% 85.6%
4279092 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 68.0 4.85e-01 100.0% 95.6%
4241887 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 68.0 4.77e-01 100.0% 92.5%
3574288 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.74 67.0 4.69e-01 100.0% 91.4%
3530898 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.74 67.0 4.67e-01 100.0% 88.2%
3760665 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 66.0 4.73e-01 100.0% 88.1%
3918154 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 67.0 4.57e-01 100.0% 89.7%
3625701 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.73 66.0 4.71e-01 100.0% 93.2%
170199 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.73 67.0 4.98e-01 100.0% 98.1%
3910699 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 65.0 4.58e-01 100.0% 95.1%
3234434 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.73 66.0 4.66e-01 100.0% 93.3%
3940726 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 66.0 4.65e-01 100.0% 95.2%
3939059 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.73 66.0 4.59e-01 100.0% 88.4%
4532479 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 66.0 4.80e-01 100.0% 89.2%
3997886 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 63.0 4.61e-01 93.3% 46.6%
3856305 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 65.0 4.71e-01 97.8% 90.6%
3580932 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 66.0 4.63e-01 100.0% 91.7%
1680525 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.72 65.0 4.86e-01 100.0% 96.3%
3399384 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 65.0 4.66e-01 100.0% 90.9%
4770105 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.72 59.0 5.04e-01 90.0% 74.7%
4453816 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.71 64.0 4.47e-01 100.0% 87.2%
3838513 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 64.0 4.78e-01 100.0% 95.5%
4129418 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 52.0 4.55e-01 84.4% 78.5%
3385776 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.66 52.0 4.55e-01 84.4% 78.5%
4400484 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.60 43.0 3.42e-01 74.4% 74.9%
144753 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.59 42.0 3.44e-01 74.4% 75.0%
3287478 223.1.1.26 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.59 42.0 3.43e-01 75.6% 73.1%
3894304 12.5.1.2 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.57 45.0 3.83e-01 85.6% 92.3%
3842593 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 42.0 3.39e-01 80.0% 80.0%
4291364 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.56 41.0 3.41e-01 75.6% 83.2%
4949861 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.56 41.0 3.36e-01 76.7% 78.8%
3288391 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.56 41.0 3.34e-01 76.7% 77.6%
4989240 223.1.1.26 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.55 41.0 2.77e-01 78.9% 40.3%
4167611 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.55 41.0 3.42e-01 78.9% 74.4%
3979533 10.32.1.55 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glft2_N 0.55 39.0 3.37e-01 73.3% 95.0%
4996180 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 41.0 3.58e-01 77.8% 88.1%
4945034 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.54 38.0 3.07e-01 74.4% 75.0%
4965944 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 39.0 2.68e-01 76.7% 39.0%
1271913 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.53 39.0 3.11e-01 76.7% 80.2%
4939836 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.53 39.0 3.07e-01 77.8% 67.2%
5004658 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.53 39.0 3.26e-01 76.7% 81.9%
5002722 223.1.1.23 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.53 38.0 3.13e-01 76.7% 72.9%
140945 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.53 39.0 3.17e-01 80.0% 67.4%
4441048 223.1.1.30 a+b three layers › Profilin-like › sensor domains › sensor domains › SpoVT_C 0.52 39.0 3.45e-01 77.8% 87.5%
5045589 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.52 38.0 3.19e-01 77.8% 71.5%
5006516 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.52 39.0 3.35e-01 80.0% 68.7%
D2 high residues 112-189
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00548.27 best Peptidase_C3 30.7 4.20e-07 85.9% 22.9%