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protein_Allo54
Euk-VirCyprinid_herpesvirus_1
protein_Allo54__YP_007003726__Cyprinid_herpesvirus_1__317858
Identity
- Accession:
- YP_007003726 ↗
- Protein ID:
- protein_Allo54
- Kingdom:
- euk
Quality
53.0
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Alloherpesviridae›
Cyvirus›
Cyprinid_herpesvirus_1
TaxID: 317858
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 320-476
D2
medium
residues 1-48_88-104_154-161_221-301_482-553
D3
medium
residues 49-87_105-153
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fx8A00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.59 | 46.0 | 3.28e-01 | 83.0% | 51.2% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.58 | 31.0 | 3.61e-01 | 86.4% | 72.6% |
| 3ulkA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 42.0 | 2.94e-01 | 78.4% | 77.9% |
| 3vkgB03 | 1.20.58.1120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 | 0.53 | 42.0 | 3.55e-01 | 88.6% | 85.9% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.51 | 37.0 | 3.79e-01 | 90.9% | 81.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3962027 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 43.0 | 3.74e-01 | 90.9% | 81.4% |
| 4937980 | 5067.1.1.4 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › MMPL | 0.52 | 39.0 | 2.95e-01 | 81.8% | 43.6% |
| 3578428 | 5067.1.1.0 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain | 0.52 | 40.0 | 3.43e-01 | 84.1% | 75.2% |
| None | — | 0.52 | 36.0 | 2.71e-01 | 73.9% | 30.6% | |
| 3586327 | 101.1.8.5 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topo_C_assoc | 0.50 | 40.0 | 3.84e-01 | 84.1% | 74.0% |
D4
medium
residues 554-624