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protein_ORF4
Euk-VirCyprinid_herpesvirus_2
protein_ORF4__YP_007003967__Cyprinid_herpesvirus_2__317878
Identity
- Accession:
- YP_007003967 ↗
- Protein ID:
- protein_ORF4
- Kingdom:
- euk
Quality
59.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Alloherpesviridae›
Cyvirus›
Cyprinid_herpesvirus_2
TaxID: 317878
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 65-103_118-155
D2
medium
residues 187-294
Domain cluster:
rep: unnamed_protein_product__YP_001096195__Cyprinid_herpesvirus_3__180230__D151-241
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5wjfA02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.60 | 40.0 | 4.72e-01 | 85.2% | 98.6% |
| 4yn0A02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.58 | 39.0 | 4.36e-01 | 91.7% | 89.2% |
| 3u3pA01 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.57 | 39.0 | 4.38e-01 | 89.8% | 91.6% |
| 3thmF00 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.57 | 36.0 | 4.18e-01 | 71.3% | 88.3% |
| 4kgqD02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.57 | 38.0 | 4.34e-01 | 90.7% | 92.5% |
| 1sg1X02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.57 | 38.0 | 4.39e-01 | 90.7% | 94.9% |
| 3me4B01 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.54 | 37.0 | 4.20e-01 | 82.4% | 96.2% |
| 1sg1X01 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.53 | 38.0 | 4.28e-01 | 80.6% | 98.8% |
| 1extA01 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.52 | 38.0 | 4.27e-01 | 81.5% | 97.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1572587 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.84 | 55.0 | 6.05e-01 | 92.6% | 80.9% |
| 3910090 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.76 | 46.0 | 4.42e-01 | 76.9% | 54.2% |
| 3756712 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.66 | 47.0 | 4.84e-01 | 75.0% | 85.7% |
| 3891819 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.62 | 43.0 | 4.90e-01 | 82.4% | 96.2% |
| 2909867 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.60 | 36.0 | 4.48e-01 | 71.3% | 94.2% |
| 3869177 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.58 | 36.0 | 4.29e-01 | 72.2% | 90.7% |
| 3894281 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.58 | 39.0 | 4.33e-01 | 90.7% | 88.2% |
| 3526975 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.57 | 51.0 | 4.35e-01 | 100.0% | 74.3% |
| 3900125 | 389.1.3.0 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like | 0.57 | 39.0 | 4.52e-01 | 90.7% | 96.2% |
| 4342996 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.56 | 40.0 | 4.60e-01 | 82.4% | 100.0% |
| 3876372 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.56 | 38.0 | 4.36e-01 | 81.5% | 95.0% |
| 3886488 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.55 | 41.0 | 4.57e-01 | 81.5% | 98.8% |
| 4221424 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.55 | 37.0 | 4.18e-01 | 88.0% | 92.5% |
| 4377309 | 389.1.3.0 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like | 0.55 | 37.0 | 4.15e-01 | 88.0% | 92.5% |
| 3540238 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.55 | 41.0 | 3.71e-01 | 93.5% | 58.6% |
| 3887726 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.54 | 39.0 | 4.38e-01 | 77.8% | 100.0% |
| 3507723 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.53 | 38.0 | 4.34e-01 | 88.9% | 100.0% |
| 3920102 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.53 | 34.0 | 3.90e-01 | 87.0% | 92.0% |
| 3871490 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.53 | 36.0 | 4.11e-01 | 81.5% | 95.0% |
| 3893236 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.53 | 34.0 | 3.97e-01 | 86.1% | 94.7% |
| 3847264 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.52 | 37.0 | 3.95e-01 | 82.4% | 84.2% |
D3
medium
residues 295-338
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00020.25 best | TNFR_c6 | 33.5 | 6.10e-08 | 95.5% | 100.0% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sg1X02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.89 | 71.0 | 5.76e-01 | 95.5% | 48.1% |
| 3mhdD02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.89 | 65.0 | 6.46e-01 | 90.9% | 75.6% |
| 1extA02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.81 | 71.0 | 6.81e-01 | 100.0% | 84.3% |
| 1sg1X01 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.79 | 70.0 | 5.71e-01 | 100.0% | 54.3% |
| 4mxwS00 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.78 | 48.0 | 3.93e-01 | 97.7% | 34.2% |
| 3u3pA01 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.70 | 57.0 | 4.77e-01 | 100.0% | 51.8% |
| 2uwiA02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.64 | 54.0 | 5.40e-01 | 95.5% | 95.5% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.58 | 45.0 | 2.90e-01 | 86.4% | 83.4% |
| 4jn3A01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.58 | 44.0 | 2.94e-01 | 90.9% | 57.1% |
| 6eudA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 43.0 | 2.98e-01 | 84.1% | 77.6% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 35.0 | 3.10e-01 | 93.2% | 39.7% |
| 3hh2D04 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.53 | 43.0 | 3.72e-01 | 88.6% | 71.4% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 41.0 | 2.97e-01 | 90.9% | 45.9% |
| 1s1dA00 | 2.120.10.100 | Mainly Beta › 6 Propeller › Neuraminidase › Apyrase | 0.52 | 45.0 | 2.73e-01 | 100.0% | 40.7% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.52 | 39.0 | 3.83e-01 | 81.8% | 91.8% |
| 4obmA00 | 3.40.630.190 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein | 0.51 | 40.0 | 2.59e-01 | 95.5% | 24.4% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.51 | 37.0 | 3.65e-01 | 79.5% | 94.0% |
| 4bwcA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.51 | 38.0 | 3.60e-01 | 81.8% | 92.5% |
| 2r44A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 34.0 | 2.40e-01 | 70.5% | 19.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3228694 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.96 | 77.0 | 6.77e-01 | 97.7% | 61.7% |
| 3391102 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.91 | 76.0 | 7.91e-01 | 97.7% | 97.5% |
| 4377309 | 389.1.3.0 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like | 0.90 | 76.0 | 6.06e-01 | 97.7% | 50.0% |
| 3891022 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.89 | 78.0 | 7.80e-01 | 100.0% | 93.3% |
| 4221424 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.88 | 74.0 | 5.92e-01 | 97.7% | 50.0% |
| 3507723 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.87 | 73.0 | 5.87e-01 | 100.0% | 50.0% |
| 3893236 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.87 | 74.0 | 6.12e-01 | 97.7% | 54.7% |
| 3901525 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.86 | 74.0 | 5.34e-01 | 97.7% | 35.7% |
| 3537811 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.85 | 79.0 | 6.09e-01 | 100.0% | 48.9% |
| 3893267 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.85 | 73.0 | 6.58e-01 | 100.0% | 70.0% |
| 3910723 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.84 | 78.0 | 5.69e-01 | 100.0% | 41.9% |
| 3911223 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.84 | 73.0 | 5.80e-01 | 100.0% | 49.4% |
| 3892307 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.83 | 72.0 | 6.22e-01 | 93.2% | 63.1% |
| 3869197 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.82 | 71.0 | 6.79e-01 | 100.0% | 84.0% |
| 3894281 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.82 | 70.0 | 5.60e-01 | 100.0% | 49.4% |
| 3556262 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.75 | 63.0 | 5.16e-01 | 100.0% | 50.6% |
| 3566395 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.75 | 60.0 | 6.25e-01 | 97.7% | 100.0% |
| 3521873 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.57 | 35.0 | 2.93e-01 | 75.0% | 31.2% |
| 3268512 | 391.1.2.8 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Dicty_CTDC | 0.54 | 43.0 | 3.87e-01 | 90.9% | 62.5% |
| 3604642 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 39.0 | 3.94e-01 | 79.5% | 95.6% |
| 3884016 | 389.1.3.0 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like | 0.53 | 43.0 | 4.05e-01 | 100.0% | 100.0% |
| 4995785 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.53 | 38.0 | 3.62e-01 | 79.5% | 96.4% |
| 3893045 | 391.1.1.5 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa | 0.52 | 41.0 | 4.00e-01 | 95.5% | 80.0% |
| 3833030 | 4.1.1.187 ↗ | beta barrels › SH3 › SH3 › SH3 › DIRP | 0.52 | 32.0 | 2.34e-01 | 93.2% | 19.3% |
| 5012898 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 37.0 | 3.44e-01 | 79.5% | 81.7% |
| 3506749 | 633.21.1.23 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 | 0.51 | 37.0 | 2.57e-01 | 81.8% | 24.8% |