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protein_ORF88

Euk-Vir

Cyprinid_herpesvirus_2

protein_ORF88__YP_007003907__Cyprinid_herpesvirus_2__317878

Identity

Accession:
YP_007003907 ↗
Protein ID:
protein_ORF88
Kingdom:
euk

Quality

32.8 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Cyvirus› Cyprinid_herpesvirus_2

TaxID: 317878

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 168-253
PDB
D2 medium residues 510-559
PDB
D3 medium residues 770-824
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
16pkA02 3.40.50.1260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate kinase, N-terminal domain 0.70 60.0 4.09e-01 100.0% 41.8%
4py9A02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.70 60.0 4.68e-01 100.0% 84.1%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.69 52.0 5.52e-01 87.3% 100.0%
1e9iC02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.67 56.0 3.53e-01 94.5% 24.8%
4ywoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 54.0 4.26e-01 94.5% 60.7%
3oidC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 54.0 3.56e-01 96.4% 46.4%
2wt9A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.64 56.0 3.80e-01 100.0% 76.3%
2qs8A02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.63 52.0 3.32e-01 98.2% 90.8%
1jztA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.62 55.0 3.58e-01 100.0% 52.7%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.45e-01 85.5% 88.9%
2lcqA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.60 43.0 3.39e-01 78.2% 82.9%
2py6A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 49.0 3.91e-01 98.2% 57.5%
3ugsB00 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.58 42.0 2.88e-01 78.2% 79.8%
4j1qA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 46.0 2.77e-01 96.4% 14.9%
3dyjA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.50 40.0 2.96e-01 92.7% 48.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4169387 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.75 64.0 5.85e-01 96.4% 77.3%
4073251 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.73 61.0 5.26e-01 92.7% 63.5%
4117410 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.73 64.0 5.54e-01 100.0% 71.8%
4656329 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.72 60.0 6.07e-01 96.4% 98.2%
4137185 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.70 61.0 5.78e-01 98.2% 89.2%
4061598 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.70 57.0 4.70e-01 90.9% 58.0%
2552 101.1.1.28 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SWIRM 0.68 51.0 4.30e-01 85.5% 53.5%
4337611 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.68 55.0 5.17e-01 94.5% 75.7%
4995430 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.67 51.0 4.35e-01 85.5% 55.8%
4290973 3498.1.1.2 ↗ alpha arrays › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › RNA polymerase sigma factor rpoD N-terminal domain › Sigma70_r1_1 0.65 54.0 5.41e-01 98.2% 98.2%
5038399 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 50.0 4.56e-01 89.1% 66.3%
4968571 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 5.25e-01 89.1% 98.0%
4941224 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 4.52e-01 98.2% 66.3%
3081874 2004.1.1.107 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.61 47.0 3.05e-01 89.1% 50.0%
3981690 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.61 42.0 3.51e-01 72.7% 56.8%
3502247 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.61 42.0 4.18e-01 78.2% 70.0%
4280807 101.1.1.13 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.59 42.0 4.21e-01 78.2% 83.6%
4928270 101.1.6.12 ↗ alpha arrays › HTH › HTH › TrpR › HTH_23 0.52 35.0 3.69e-01 74.5% 88.9%